Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40167
(605 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_17996| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.96
SB_16000| Best HMM Match : Gal-3-0_sulfotr (HMM E-Value=5.5e-14) 30 1.7
SB_36169| Best HMM Match : DUF676 (HMM E-Value=0) 28 5.1
SB_45177| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_51476| Best HMM Match : Ion_trans (HMM E-Value=6.29996e-41) 28 6.7
SB_3211| Best HMM Match : Keratin_B2 (HMM E-Value=0.83) 28 6.7
SB_3091| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_46974| Best HMM Match : TPR_1 (HMM E-Value=1.5e-10) 27 8.9
SB_12127| Best HMM Match : Endonuclease_NS (HMM E-Value=2.9e-35) 27 8.9
SB_4548| Best HMM Match : WD40 (HMM E-Value=6.7e-35) 27 8.9
>SB_17996| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 778
Score = 30.7 bits (66), Expect = 0.96
Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 3/45 (6%)
Frame = -2
Query: 463 HHQHLRVYCLNVQLF---SRLHHNHSAVQCIFVLVAPYTEPVLHH 338
HHQH+ + +N+ + HH+H + I + + P + HH
Sbjct: 457 HHQHITITTINILPLLPSNYYHHHHQHITIITINILPSSPSTYHH 501
>SB_16000| Best HMM Match : Gal-3-0_sulfotr (HMM E-Value=5.5e-14)
Length = 628
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Frame = +2
Query: 56 ASEPALAADWAK----LEELYNKKLWHQLTLKLQEFVKNPALQR 175
+SE A +W+K L E +NK LW +++ + EF K+ A+ R
Sbjct: 525 SSEKAALKNWSKADVALYEYFNKTLWQRISYEEPEFSKDLAVFR 568
>SB_36169| Best HMM Match : DUF676 (HMM E-Value=0)
Length = 2442
Score = 28.3 bits (60), Expect = 5.1
Identities = 25/108 (23%), Positives = 45/108 (41%), Gaps = 1/108 (0%)
Frame = +1
Query: 172 EGRQPHTVVQ*LFDHLRKQNKSPIIG*-DIAHIVEQYVNKRDAVTFLEKVETKVTMNDEA 348
EG+ V + L D +++ K + ++ + + +T E KVT + +
Sbjct: 404 EGKSTEEVKEILGDIIKRVEKITLDHFTSLSSVNPSEADNASLLTTEESSVVKVTEDRSS 463
Query: 349 LALCKVLQGQIYIEQLNDYDAAEKIIEHLDSTLEDADGVTPVHGRFYK 492
V + E L D+D+ K+ E L +++ DGVT YK
Sbjct: 464 AYFDCVTDTKASDEGLTDWDSITKLDEELTNSVTQQDGVTDCDDGTYK 511
>SB_45177| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 863
Score = 27.9 bits (59), Expect = 6.7
Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 1/86 (1%)
Frame = +2
Query: 32 SDFLTKKQASEPALAADWAKLEELYNKKLWHQL-TLKLQEFVKNPALQRGDNLIQLYNNF 208
++++T ++ + ++ LE L +KLW T +L E ++ L D ++QLYN
Sbjct: 33 AEYVTSEETNSLSITISCQSLEGL--QKLWDDAQTGRLNEEMEK--LLVVDEVLQLYNLK 88
Query: 209 LTTFESKINPLSLVETLLISWNSMST 286
++KI+P E + WN M +
Sbjct: 89 EIKLQTKIDP----EDFVNCWNQMKS 110
>SB_51476| Best HMM Match : Ion_trans (HMM E-Value=6.29996e-41)
Length = 823
Score = 27.9 bits (59), Expect = 6.7
Identities = 20/87 (22%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
Frame = -3
Query: 456 SIFECTV*MFNYFLGCIIIIQLFNVYLSL*HLTQSQCFIIHCNFRFHLLK-ECDSISLVD 280
++F+C + L +II LF + S+ + Q CN R + + EC V
Sbjct: 78 AVFQCMLYSLRNVLNILIITVLFLIIFSVIGVQLFQGKFFSCNDRSKMTEAECKGHYFVY 137
Query: 279 ILFHDMSNVSTNDRGFILLSKVVKKLL 199
+ D+S V + F +++K ++ +
Sbjct: 138 SDYSDLSKVERDCLHFAMVAKPSERFM 164
>SB_3211| Best HMM Match : Keratin_B2 (HMM E-Value=0.83)
Length = 533
Score = 27.9 bits (59), Expect = 6.7
Identities = 9/33 (27%), Positives = 21/33 (63%)
Frame = -3
Query: 342 IIHCNFRFHLLKECDSISLVDILFHDMSNVSTN 244
+ HC FRF L D +++++ + H M +++++
Sbjct: 125 VSHCEFRFDLQISTDLVAILNYVHHGMPSMASS 157
>SB_3091| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 159
Score = 27.9 bits (59), Expect = 6.7
Identities = 18/61 (29%), Positives = 31/61 (50%)
Frame = +1
Query: 376 QIYIEQLNDYDAAEKIIEHLDSTLEDADGVTPVHGRFYKLASEYSESVVPLAVTTAQLSV 555
+IY+++L D E I++ S D+DG TP+H Y E++ V L A ++
Sbjct: 82 KIYVQELFSLDP-EWDIKYATSDSTDSDGQTPIH---YAATCEFTSIVQQLLDAHALTNI 137
Query: 556 R 558
+
Sbjct: 138 K 138
>SB_46974| Best HMM Match : TPR_1 (HMM E-Value=1.5e-10)
Length = 466
Score = 27.5 bits (58), Expect = 8.9
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +1
Query: 382 YIEQLNDYDAAEKIIEHLDSTLEDADGVTPV 474
Y+E L DY++A KI + +S DAD + +
Sbjct: 430 YVEALKDYESALKIDPNNESLRADADRIRAI 460
>SB_12127| Best HMM Match : Endonuclease_NS (HMM E-Value=2.9e-35)
Length = 1577
Score = 27.5 bits (58), Expect = 8.9
Identities = 8/22 (36%), Positives = 16/22 (72%)
Frame = +1
Query: 319 ETKVTMNDEALALCKVLQGQIY 384
+T++ +N+E + CK+L G +Y
Sbjct: 758 QTRIRINEEVVLACKLLNGHLY 779
>SB_4548| Best HMM Match : WD40 (HMM E-Value=6.7e-35)
Length = 844
Score = 27.5 bits (58), Expect = 8.9
Identities = 21/65 (32%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Frame = -2
Query: 553 PKAAR**RPVGPRTLNI-PRLTYKIVRELESHHQHLRVYCLNVQLFSRLHHNHSAVQCIF 377
P+A R + R LNI +LT K + L S + + Y LNV++ ++H HS+ Q +
Sbjct: 38 PRAYRRYARITTRALNIVQQLTTKYI--LFSQYYEMS-YGLNVEMHKQVHCRHSSPQVLH 94
Query: 376 VLVAP 362
+ P
Sbjct: 95 QVYLP 99
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,107,208
Number of Sequences: 59808
Number of extensions: 410451
Number of successful extensions: 1225
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1221
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1475788250
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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