Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40167
         (605 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g19006.1 68417.m02801 26S proteasome regulatory subunit, puta...    80   1e-15
At5g45620.2 68418.m05607 26S proteasome regulatory subunit, puta...    78   5e-15
At5g45620.1 68418.m05608 26S proteasome regulatory subunit, puta...    78   5e-15
At4g20140.1 68417.m02947 leucine-rich repeat transmembrane prote...    29   3.2  
At2g20800.1 68415.m02446 pyridine nucleotide-disulphide oxidored...    28   4.2  
At3g26680.2 68416.m03336 DNA cross-link repair protein-related c...    28   5.5  
At3g26680.1 68416.m03335 DNA cross-link repair protein-related c...    28   5.5  
At3g49510.1 68416.m05411 F-box family protein contains Pfam PF00...    27   7.3  
At2g36730.1 68415.m04506 pentatricopeptide (PPR) repeat-containi...    27   7.3  
At2g10440.1 68415.m01097 hypothetical protein                          27   9.6  

>At4g19006.1 68417.m02801 26S proteasome regulatory subunit,
           putative (RPN9) similar to 26S proteasome subunit p40.5
           [Homo sapiens] gi|3618343|dbj|BAA33214
          Length = 386

 Score = 79.8 bits (188), Expect = 1e-15
 Identities = 36/76 (47%), Positives = 50/76 (65%)
 Frame = +2

Query: 38  FLTKKQASEPALAADWAKLEELYNKKLWHQLTLKLQEFVKNPALQRGDNLIQLYNNFLTT 217
           +L  ++ + P L   +  L +LY KKLWHQLTLKL++F+     Q GD LIQLYNNF+T 
Sbjct: 6   YLESQKNAHPELGEWYNSLADLYQKKLWHQLTLKLEQFIALSVFQAGDALIQLYNNFITD 65

Query: 218 FESKINPLSLVETLLI 265
           FE++IN L L    ++
Sbjct: 66  FETRINLLKLAHFAVV 81



 Score = 31.1 bits (67), Expect = 0.59
 Identities = 24/86 (27%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
 Frame = +1

Query: 265 IVEQYVNKRDAVTFLEKV--ETKVTMNDEALALCKVLQGQIYIEQLNDYDAAE--KIIEH 432
           +  QY  K  AV++LE V  + K T           ++ QI + +L   D  E  KI++ 
Sbjct: 82  VSRQYPEKEAAVSYLEGVIEKLKATKESRINEPISYIETQIALFKLEQGDQKECKKILDD 141

Query: 433 LDSTLEDADGVTP-VHGRFYKLASEY 507
             S L+    + P V+  F+ ++S+Y
Sbjct: 142 GKSLLDSMTDIDPSVYANFFWVSSQY 167


>At5g45620.2 68418.m05607 26S proteasome regulatory subunit,
           putative (RPN9) contains similarity to 26S proteasome
           subunit p40.5 GI:3618343 from [Homo sapiens]
          Length = 350

 Score = 77.8 bits (183), Expect = 5e-15
 Identities = 37/85 (43%), Positives = 51/85 (60%)
 Frame = +2

Query: 38  FLTKKQASEPALAADWAKLEELYNKKLWHQLTLKLQEFVKNPALQRGDNLIQLYNNFLTT 217
           +L   + + P L   +  L +LY KKLWHQLTLKL++F+     Q GD LIQ Y+NF+T 
Sbjct: 6   YLESLKNTHPELGEWYNSLADLYQKKLWHQLTLKLEQFIALAVFQAGDALIQFYHNFITD 65

Query: 218 FESKINPLSLVETLLISWNSMSTRE 292
           FE+KIN L L    ++     S +E
Sbjct: 66  FETKINLLKLAHFAVVVSRQYSEKE 90



 Score = 32.3 bits (70), Expect = 0.26
 Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
 Frame = +1

Query: 265 IVEQYVNKRDAVTFLEKVETKVTMNDEALALCKVL----QGQIYIEQLNDYDAAEKIIEH 432
           +  QY  K  AV++LE V  K+    E      ++    Q  ++  +  D    +KI++ 
Sbjct: 82  VSRQYSEKEAAVSYLESVIEKLRATKEPRITEPIIYIETQKALFKLEQGDQKECKKILDD 141

Query: 433 LDSTLEDADGVTP-VHGRFYKLASEY 507
             S+L+    + P V+  FY ++S+Y
Sbjct: 142 GKSSLDSMTDIDPSVYANFYWVSSQY 167


>At5g45620.1 68418.m05608 26S proteasome regulatory subunit,
           putative (RPN9) contains similarity to 26S proteasome
           subunit p40.5 GI:3618343 from [Homo sapiens]
          Length = 386

 Score = 77.8 bits (183), Expect = 5e-15
 Identities = 37/85 (43%), Positives = 51/85 (60%)
 Frame = +2

Query: 38  FLTKKQASEPALAADWAKLEELYNKKLWHQLTLKLQEFVKNPALQRGDNLIQLYNNFLTT 217
           +L   + + P L   +  L +LY KKLWHQLTLKL++F+     Q GD LIQ Y+NF+T 
Sbjct: 6   YLESLKNTHPELGEWYNSLADLYQKKLWHQLTLKLEQFIALAVFQAGDALIQFYHNFITD 65

Query: 218 FESKINPLSLVETLLISWNSMSTRE 292
           FE+KIN L L    ++     S +E
Sbjct: 66  FETKINLLKLAHFAVVVSRQYSEKE 90



 Score = 32.3 bits (70), Expect = 0.26
 Identities = 22/86 (25%), Positives = 41/86 (47%), Gaps = 5/86 (5%)
 Frame = +1

Query: 265 IVEQYVNKRDAVTFLEKVETKVTMNDEALALCKVL----QGQIYIEQLNDYDAAEKIIEH 432
           +  QY  K  AV++LE V  K+    E      ++    Q  ++  +  D    +KI++ 
Sbjct: 82  VSRQYSEKEAAVSYLESVIEKLRATKEPRITEPIIYIETQKALFKLEQGDQKECKKILDD 141

Query: 433 LDSTLEDADGVTP-VHGRFYKLASEY 507
             S+L+    + P V+  FY ++S+Y
Sbjct: 142 GKSSLDSMTDIDPSVYANFYWVSSQY 167


>At4g20140.1 68417.m02947 leucine-rich repeat transmembrane protein
           kinase, putative Cf-2.2, Lycopersicon pimpinellifolium,
           PIR:T10515
          Length = 1249

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 28/82 (34%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
 Frame = +2

Query: 41  LTKKQASEPALAADWAKLEELYNKKLWHQLTLKLQEFVKNPALQRGDNLIQL-YNNFLTT 217
           L K Q S  +L     KL +LY  +L    +L  +  V+   LQ   + + L YNNF   
Sbjct: 726 LDKNQFSG-SLPQAMGKLSKLYELRLSRN-SLTGEIPVEIGQLQDLQSALDLSYNNFTGD 783

Query: 218 FESKINPLSLVETLLISWNSMS 283
             S I  LS +ETL +S N ++
Sbjct: 784 IPSTIGTLSKLETLDLSHNQLT 805


>At2g20800.1 68415.m02446 pyridine nucleotide-disulphide
           oxidoreductase family protein similar to GI:3718005
           alternative NADH-dehydrogenase {Yarrowia lipolytica} ;
           contains Pfam profile PF00070: Pyridine
           nucleotide-disulphide oxidoreductase
          Length = 582

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +2

Query: 137 KLQEFVKNPALQRGDNLIQLYNNFLTTF 220
           K+QEF K   L+ GD+++ +++  +T F
Sbjct: 259 KVQEFTKITLLEAGDHILNMFDKRITAF 286


>At3g26680.2 68416.m03336 DNA cross-link repair protein-related
           contains weak similarity to Swiss-Prot:P30620 DNA
           cross-LINK repair protein PSO2/SNM1 [Saccharomyces
           cerevisiae]
          Length = 484

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 18/63 (28%), Positives = 29/63 (46%)
 Frame = +1

Query: 325 KVTMNDEALALCKVLQGQIYIEQLNDYDAAEKIIEHLDSTLEDADGVTPVHGRFYKLASE 504
           KV   DE L + +   G +   +   +  +EKI EHLD     + G   ++G  Y   S 
Sbjct: 384 KVERLDEHLKIYREQYGAVLAFRPTGWTYSEKIGEHLDLIKPTSRGKITIYGVPYSEHSS 443

Query: 505 YSE 513
           ++E
Sbjct: 444 FTE 446


>At3g26680.1 68416.m03335 DNA cross-link repair protein-related
           contains weak similarity to Swiss-Prot:P30620 DNA
           cross-LINK repair protein PSO2/SNM1 [Saccharomyces
           cerevisiae]
          Length = 484

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 18/63 (28%), Positives = 29/63 (46%)
 Frame = +1

Query: 325 KVTMNDEALALCKVLQGQIYIEQLNDYDAAEKIIEHLDSTLEDADGVTPVHGRFYKLASE 504
           KV   DE L + +   G +   +   +  +EKI EHLD     + G   ++G  Y   S 
Sbjct: 384 KVERLDEHLKIYREQYGAVLAFRPTGWTYSEKIGEHLDLIKPTSRGKITIYGVPYSEHSS 443

Query: 505 YSE 513
           ++E
Sbjct: 444 FTE 446


>At3g49510.1 68416.m05411 F-box family protein contains Pfam
           PF00646: F-box domain; contains TIGRFAM TIGR01640 :
           F-box protein interaction domain
          Length = 662

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +2

Query: 173 RGDNLIQLYNNFLTTFESKINPLSLVETLLISWNSMSTREM 295
           R + L  LYN+++T    +I   + +E   +SW+S  T +M
Sbjct: 263 RDEKLAVLYNHYVTAEIIEIRISTKIEPNAVSWSSFLTVDM 303


>At2g36730.1 68415.m04506 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 501

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 176 GDNLIQLYNNFLTTFESKINPLSLVETLLISWNSMST 286
           G+NLI LY     T +++     + E  ++SWNS+ T
Sbjct: 151 GNNLIHLYGTCKKTSDARKVFDEMTERNVVSWNSIMT 187


>At2g10440.1 68415.m01097 hypothetical protein
          Length = 935

 Score = 27.1 bits (57), Expect = 9.6
 Identities = 11/29 (37%), Positives = 21/29 (72%)
 Frame = -1

Query: 584 GPHPRRRTQRTESCAVVTASGTTDSEYSE 498
           GP+ R R  +T++C+ VTA+ T+ +++ E
Sbjct: 100 GPYNRSRFSKTDTCS-VTAAATSSAKFVE 127


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,199,136
Number of Sequences: 28952
Number of extensions: 277618
Number of successful extensions: 763
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 746
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1206913392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)