Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40165
         (762 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit...    38   0.001
SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces po...    35   0.011
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces...    28   1.3  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    27   2.2  
SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces ...    27   2.2  
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch...    27   2.9  
SPBC28F2.09 |||transcription factor TFIIA complex large subunit ...    26   5.1  
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog...    26   6.7  
SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr 3...    26   6.7  
SPAC1002.16c |||nicotinic acid plasma membrane transporter |Schi...    25   8.9  

>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 38.3 bits (85), Expect = 0.001
 Identities = 21/71 (29%), Positives = 41/71 (57%)
 Frame = +2

Query: 266 QARVWQWASWSDSELLPASCAWVFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTF 445
           +A+V Q+ S+++SEL  A    + P +    +++Q  + A++ +       D  L ++T+
Sbjct: 90  KAKVLQYCSFTNSELPGAFRPIIAPRVFGAPYDEQAAKEAETAIALIFARFDEELASKTY 149

Query: 446 LVTERITLADV 478
           LV  R+TLAD+
Sbjct: 150 LVGSRLTLADI 160



 Score = 31.9 bits (69), Expect = 0.10
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = +3

Query: 120 NKSEDFLKKFPAGKVPAFESADGKVLLTESNAIAYYVAN 236
           N   D   KFP  K+P F   DG   L+E+ AIA+Y+A+
Sbjct: 38  NFPADLAAKFPLQKMPVFVGKDG-FPLSETLAIAFYLAS 75


>SPCC1183.02 |||glutathione S-transferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 220

 Score = 35.1 bits (77), Expect = 0.011
 Identities = 22/87 (25%), Positives = 48/87 (55%), Gaps = 2/87 (2%)
 Frame = +2

Query: 254 NLATQARVWQWASWSDSELL-PASCA-WVFPYLGIMQFNKQNVERAKSDLLAALKVLDGH 427
           N   +A + +W  + + +++ P +   WV  + G + + ++  + + +  + +LK+ +  
Sbjct: 89  NEVEEAEMLKWMCFINFDIVTPQNVRPWVGMFRGNIPYEEKPFKESATRAIDSLKIPNEL 148

Query: 428 LLTRTFLVTERITLADVIVFSTLLHAF 508
           +  RT+LV +R TLAD + F +LL  F
Sbjct: 149 VKDRTYLVGDRFTLAD-LFFGSLLRIF 174



 Score = 30.3 bits (65), Expect = 0.31
 Identities = 24/73 (32%), Positives = 31/73 (42%)
 Frame = +3

Query: 9   GVLYTYPENFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFESADG 188
           G LY++  N R    L  A+     V +   +       S D   KFP  K+P F  ADG
Sbjct: 4   GTLYSFKTNTRTVCLLELAKLLDLQVDLVETYPH---KFSADLAAKFPLQKLPVFIGADG 60

Query: 189 KVLLTESNAIAYY 227
              L+E  AI  Y
Sbjct: 61  -FELSEVIAIVKY 72


>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 442

 Score = 28.3 bits (60), Expect = 1.3
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 393 TYWPP*KYWTDIFSHAPSLLPRESHLPMSLS 485
           TY PP  Y  D+FS APS+   +     S+S
Sbjct: 257 TYLPPFNYDHDVFSFAPSVASADQFTESSMS 287


>SPBC211.03c |||guanyl-nucleotide exchange
           factor|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1462

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
 Frame = +3

Query: 435 HAPSLLPRESHLPMSLSSVHCCM-LSARARPER----PFVADKRSALVPDRRPP 581
           H PS  PRE ++  SL  V   + LS    P+R     F   KR A     RPP
Sbjct: 391 HIPSTTPRERNVETSLHKVVSSLDLSEEISPDRATPTSFTERKRFAFDTRNRPP 444


>SPAC14C4.04 |B22918-2||hypothetical protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 267

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +3

Query: 255 IWLPKPVSGSGHHGLTVNYCL-LPVLGSSLTLV 350
           +W+P PV  SG    T+  C+ LP  G  +T V
Sbjct: 23  LWVPTPVGRSGRKHRTLKMCIVLPDTGYDVTQV 55


>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
           Eme1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 16/62 (25%), Positives = 30/62 (48%)
 Frame = +3

Query: 27  PENFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFESADGKVLLTE 206
           P  F++ KA +  QY+          +FG  +K ++F K+    ++  F S +  +L+  
Sbjct: 553 PNYFKSLKAELNRQYAAAVNSGTRPLLFGSLSKYQNFTKEKLESEIVRF-SFEHSILINT 611

Query: 207 SN 212
           SN
Sbjct: 612 SN 613


>SPBC28F2.09 |||transcription factor TFIIA complex large subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 369

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -3

Query: 196 STFPSALSNAGTFPAGNFFKKSSDL 122
           +TFP A +  GTFP G  F   S L
Sbjct: 52  ATFPWAQAPVGTFPIGQLFDPVSGL 76


>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 982

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +3

Query: 303 VNYCLLPVLGSSLTLVSCNSTNRML 377
           V + L+P LG  L + SCN+  R L
Sbjct: 259 VTHALVPELGLQLAMASCNALLRYL 283


>SPCC5E4.05c |||serine hydrolase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 378

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 17/74 (22%), Positives = 29/74 (39%)
 Frame = +3

Query: 108 FGETNKSEDFLKKFPAGKVPAFESADGKVLLTESNAIAYYVANESLRGGIWLPKPVSGSG 287
           FG + K     +    G    F   D ++L      +  ++   S+ GG+ L   +SG+ 
Sbjct: 55  FGHSRKGGPKKQGCTGGWSLVFPDLDYQILRASDTELPLFLWGHSMGGGLALRYGISGTH 114

Query: 288 HHGLTVNYCLLPVL 329
            H L       P+L
Sbjct: 115 RHKLAGVIAQAPML 128


>SPAC1002.16c |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 499

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +3

Query: 258 WLPKPVSGSGHHGLTVNYCLLPV 326
           +LP  +SG G+  L+V Y  +PV
Sbjct: 308 FLPAIISGMGYTSLSVQYMTIPV 330


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,129,062
Number of Sequences: 5004
Number of extensions: 67300
Number of successful extensions: 208
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)