Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40165
         (762 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48657| Best HMM Match : GST_C (HMM E-Value=5.8e-07)                 85   8e-17
SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.33 
SB_7437| Best HMM Match : PAS (HMM E-Value=7.2e-14)                    31   1.0  
SB_3733| Best HMM Match : No HMM Matches (HMM E-Value=.)               30   1.8  
SB_45212| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.4  
SB_45214| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.5  
SB_14988| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-08)                 29   5.5  
SB_51364| Best HMM Match : DUF1431 (HMM E-Value=5.9)                   29   5.5  
SB_52295| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_16159| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_25676| Best HMM Match : TSP_1 (HMM E-Value=0.0055)                  28   7.2  
SB_36561| Best HMM Match : BACK (HMM E-Value=1.4013e-45)               28   9.5  
SB_6496| Best HMM Match : Collagen (HMM E-Value=0)                     28   9.5  
SB_32980| Best HMM Match : DEAD (HMM E-Value=0)                        28   9.5  
SB_19860| Best HMM Match : GST_C (HMM E-Value=9.6e-10)                 28   9.5  

>SB_48657| Best HMM Match : GST_C (HMM E-Value=5.8e-07)
          Length = 203

 Score = 84.6 bits (200), Expect = 8e-17
 Identities = 41/76 (53%), Positives = 51/76 (67%)
 Frame = +3

Query: 3   AAGVLYTYPENFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFESA 182
           AAG LYTYP++FRA K LIAA+YSGT ++V P F FG+ N + +FLKKFP GKVPAFE+ 
Sbjct: 2   AAGKLYTYPDSFRAQKILIAAEYSGTKIEV-PAFTFGKDNHTAEFLKKFPLGKVPAFETK 60

Query: 183 DGKVLLTESNAIAYYV 230
                      +  YV
Sbjct: 61  TANACTRAMPLLTTYV 76



 Score = 72.5 bits (170), Expect = 3e-13
 Identities = 32/71 (45%), Positives = 50/71 (70%)
 Frame = +2

Query: 284 WASWSDSELLPASCAWVFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTFLVTERI 463
           + +++D ELLPA+  WVFP  G+MQ++KQ+ ++A  D+   + +L+  LL +TFLV ER+
Sbjct: 75  YVNFADQELLPAAATWVFPTYGMMQYHKQSTDKAMEDVKKYMTMLNDVLLMKTFLVGERV 134

Query: 464 TLADVIVFSTL 496
           TLAD+ V   L
Sbjct: 135 TLADIAVCCVL 145


>SB_27917| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4554

 Score = 32.7 bits (71), Expect = 0.33
 Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 7/79 (8%)
 Frame = +3

Query: 93   APNFVFGET---NKSEDFLKKFPAGKVPAFE---SADGKVL-LTESNAIAYYVANESLRG 251
            +PN +F      + +E +L  F +G   + E   SA+G++  L     +A  ++++  R 
Sbjct: 1798 SPNKMFNTAAPQSSNEVWLTSFCSGHSLSVELAASAEGQLNGLVSQAGVASLLSSQGFRE 1857

Query: 252  GIWLPKPVSGSGHHGLTVN 308
            G+W P+PVSG     L ++
Sbjct: 1858 GLWKPEPVSGEAFSSLPLS 1876


>SB_7437| Best HMM Match : PAS (HMM E-Value=7.2e-14)
          Length = 505

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 19/76 (25%), Positives = 32/76 (42%)
 Frame = +3

Query: 33  NFRAYKALIAAQYSGTDVKVAPNFVFGETNKSEDFLKKFPAGKVPAFESADGKVLLTESN 212
           N   +K +   Q   +  K+ P  V GE N   + +KK     +P      GK +  + +
Sbjct: 105 NIGKFKMVWIDQIDESTKKLKPKMVAGEDNGFVNAIKKVSLEDIPEGNGPSGKAIREKRS 164

Query: 213 AIAYYVANESLRGGIW 260
            I   + N+SL   +W
Sbjct: 165 IIVNDIENDSLM-NLW 179


>SB_3733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1755

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 27/80 (33%), Positives = 36/80 (45%), Gaps = 1/80 (1%)
 Frame = -1

Query: 366 LLNCMIPR*GKTQAQEAGSSSLSDHDAHCQTRAWVARFLRGDFHWQRSKRWHCFQLGALF 187
           LL  M  R  +  AQ AG  S+ D    C     + R + GD+HWQ +K +      A F
Sbjct: 108 LLKRMRKRARELAAQGAGEESVFDR-IRCVA---LTRIVYGDYHWQLAKAYSKLAY-AYF 162

Query: 186 H-RHFRMQALFRQETSSRSL 130
           H R    QAL   E +  +L
Sbjct: 163 HLRGLAPQALKHAENARDTL 182


>SB_45212| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1304

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +2

Query: 332 VFPYLGIMQFNKQNVERAKSDLLAALKVLDGHLLTRTFLVTERITLAD 475
           ++P +   Q    NV+R  +DL  + K+     L R F V E  T AD
Sbjct: 73  IYPNIMDEQIRTANVQRGSADLQTSAKITLKKFLPRCFSVIESTTSAD 120


>SB_45214| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 196

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 17/57 (29%), Positives = 24/57 (42%)
 Frame = +1

Query: 214 PSLTTLPMKVSAEESGYPSPCLAVGIMV*Q*TTACFLCLGLPLPWYHAIQQTEC*TC 384
           PS+TT    +++E  G P P +  G  +    T C L   L   W  A+    C  C
Sbjct: 109 PSMTTTYGGITSEARGIPEPIVTTGSAMNDSVTGCSL---LHQMWKKAVSDNFCALC 162


>SB_14988| Best HMM Match : 7tm_1 (HMM E-Value=2.6e-08)
          Length = 619

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 16/37 (43%), Positives = 20/37 (54%)
 Frame = -3

Query: 583 AGGRRSGTNAERLSATNGRSGLARAESMQQCTEDNDI 473
           A GR  G N ERL    GRS   +AE   +  +DND+
Sbjct: 48  ADGRGCGQNDERLGEKRGRS-CFKAEEHFETDKDNDV 83


>SB_51364| Best HMM Match : DUF1431 (HMM E-Value=5.9)
          Length = 364

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -1

Query: 162 LFRQETSSRSLRTCWSRQIRNSVLLSHQSRNIVRRSTLYK 43
           +FR +  + +     S ++ N V +SHQSR IV   T+ K
Sbjct: 102 VFRSKQQAPNKAVGRSDEVTNEVAVSHQSRRIVESETVRK 141


>SB_52295| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1325

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 15/34 (44%), Positives = 19/34 (55%)
 Frame = +1

Query: 265  PSPCLAVGIMV*Q*TTACFLCLGLPLPWYHAIQQ 366
            PSPC A+     + +T   +C  LP PWY AI Q
Sbjct: 1054 PSPCYAM-----RQSTKPVVCGNLPSPWYAAIYQ 1082


>SB_16159| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 351

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 239 KSPRRNLATQARVWQWASWSDSELLPASCA 328
           KSP  +L T A+V+ WA W   ++   SCA
Sbjct: 75  KSP--DLTTTAQVYSWAMWEPWQMRNLSCA 102


>SB_25676| Best HMM Match : TSP_1 (HMM E-Value=0.0055)
          Length = 141

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +2

Query: 239 KSPRRNLATQARVWQWASWSDSELLPASCA 328
           KSP  +L T A+V+ WA W   ++   SCA
Sbjct: 75  KSP--DLTTTAQVYSWAMWEPWQMRNLSCA 102


>SB_36561| Best HMM Match : BACK (HMM E-Value=1.4013e-45)
          Length = 554

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = +2

Query: 350 IMQFNKQNVERAKSDLLAALKVLDGHLLTRTFLVTERITLADVIV 484
           +M + K +VE  K DL   L+ +   LLTR FL+ + +   D+I+
Sbjct: 194 VMSWIKHDVESRKKDLANLLEHIRFPLLTRKFLI-DTVAKEDLIM 237


>SB_6496| Best HMM Match : Collagen (HMM E-Value=0)
          Length = 1234

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -3

Query: 577 GRRSGTNAERLSATNGRSGLARAESMQQC-TEDNDIGKCDSLGNKEGACE 431
           G+      +    T G+ G  R      C +E+++ G+CDS  ++EG C+
Sbjct: 260 GKDGSPGLKGTRGTRGKRG-ERGRKGDMCDSEESEEGECDSEESEEGECD 308


>SB_32980| Best HMM Match : DEAD (HMM E-Value=0)
          Length = 985

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
 Frame = +1

Query: 427 SSHTHLPC--YRENHTCRCHCLQYT 495
           S +T  PC  Y+   TC C C+ YT
Sbjct: 873 SHYTPFPCPHYQGGPTCECQCMGYT 897


>SB_19860| Best HMM Match : GST_C (HMM E-Value=9.6e-10)
          Length = 260

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
 Frame = +2

Query: 368 QNVERAK--SDLLAALKVLDGHLLTRTFLVTERITLADVIVFSTL 496
           ++VE AK  +D+   L  ++ HL  R FLV + +T+AD  V +++
Sbjct: 112 RDVEGAKIVADINKFLGFVEKHLAGRKFLVGDSVTIADFSVATSI 156


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,359,705
Number of Sequences: 59808
Number of extensions: 548734
Number of successful extensions: 1554
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 1382
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1552
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)