Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40165
         (762 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   2.3  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          23   3.1  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   5.4  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   5.4  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   5.4  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    22   7.1  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   9.4  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 15   LYTYPENFRAYKALIAAQYSGTDVKVA 95
            L+  PE+F A  ALI+ Q  G  + VA
Sbjct: 1616 LFRKPEHFVASYALISNQCEGDSLNVA 1642


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = -2

Query: 653 YFLGSYVGGPAQSVSEPTTPDT 588
           YFLG+Y   P  + S  T P T
Sbjct: 371 YFLGNYSLVPTTTASPTTEPST 392


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 12/55 (21%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = +2

Query: 251 RNLATQARVWQWASWSDSELLPASCAWVFPY-LGIMQFNKQNVERAKSDLLAALK 412
           RN     ++ +W +WS+ +L          Y   +       +E+++ D L A+K
Sbjct: 377 RNSGATDKIIRWCTWSEGDLEKCKALTRAAYSRDVRPKYDCTLEKSQDDCLKAIK 431


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 12/55 (21%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = +2

Query: 251 RNLATQARVWQWASWSDSELLPASCAWVFPY-LGIMQFNKQNVERAKSDLLAALK 412
           RN     ++ +W +WS+ +L          Y   +       +E+++ D L A+K
Sbjct: 377 RNSGATDKIIRWCTWSEGDLEKCKALTRAAYSRDVRPKYDCTLEKSQDDCLKAIK 431


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 12/55 (21%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = +2

Query: 251 RNLATQARVWQWASWSDSELLPASCAWVFPY-LGIMQFNKQNVERAKSDLLAALK 412
           RN     ++ +W +WS+ +L          Y   +       +E+++ D L A+K
Sbjct: 377 RNSGATDKIIRWCTWSEGDLEKCKALTRAAYSRDVRPKYDCTLEKSQDDCLKAIK 431


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -3

Query: 469 KCDSLGNKEGACEKMSVQYF*GGQ*VRLC 383
           KC++L      C + SV Y  G    +LC
Sbjct: 354 KCNTLERTPSKCSQTSVHYSNGQTHSQLC 382


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +1

Query: 637 YDPKKYQGV*LVH 675
           +DPK+Y GV ++H
Sbjct: 88  WDPKEYGGVEMLH 100


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 209,535
Number of Sequences: 438
Number of extensions: 4819
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)