Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40164
         (728 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2A9.12 |orc6|SPBC2D10.02|origin recognition complex subunit ...    29   0.90 
SPBC3B9.17 |isa2||iron-sulfur protein Isa2|Schizosaccharomyces p...    25   8.4  

>SPBC2A9.12 |orc6|SPBC2D10.02|origin recognition complex subunit
           Orc6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 264

 Score = 28.7 bits (61), Expect = 0.90
 Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +1

Query: 16  PTRPTKFDNYLIIKSE-YHNLDSPITNAKASDELLVIASPFINTSSVIPILSNNFNLTLN 192
           PT  T+++  LI   E +        N KA++EL     P++       +LSN+ NL +N
Sbjct: 15  PTESTEYNERLISLGESFLEWSKYKHNLKATEEL---CRPYMAAHLACELLSNDLNLEIN 71

Query: 193 IL 198
           +L
Sbjct: 72  LL 73


>SPBC3B9.17 |isa2||iron-sulfur protein Isa2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 205

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 14/51 (27%), Positives = 29/51 (56%)
 Frame = -1

Query: 200 CNMFSVKLKLFDRIGITLDVFINGLAITSSSSEALALVIGESRL*YSDFII 48
           C+ + V  ++ ++IG    VF+ G A   + + +L L+ G S + Y++ +I
Sbjct: 131 CHGYQVSFRMDNKIGNADTVFVRGKARVVADNISLPLISG-SEIEYTNELI 180


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,830,095
Number of Sequences: 5004
Number of extensions: 55347
Number of successful extensions: 96
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)