Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40164
         (728 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25825| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.2  
SB_17119| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.1  

>SB_25825| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 93

 Score = 29.9 bits (64), Expect = 2.2
 Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
 Frame = +2

Query: 482 LRAYCRPWAFQLHQDRYLER-IFVRYIVFSSKILLLAICNS 601
           LRAY +P+AF+ H+    +    VR IV ++K L+L I  S
Sbjct: 36  LRAYPKPFAFKEHESHSAQTDNVVRCIVINNKSLILPIIRS 76


>SB_17119| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 618

 Score = 28.7 bits (61), Expect = 5.1
 Identities = 20/51 (39%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = -1

Query: 245 EVLCAKAIR*HVHFQCNMFSVKLKLFDR-IGITLDVFINGLAITSSSSEAL 96
           E L  +AIR  + F C     KLKL+D   G++LD  I  L++  +SS  L
Sbjct: 146 EFLEQQAIRDKLTFSCVDDRSKLKLYDEGAGLSLDKTITILSMKEASSREL 196


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,097,395
Number of Sequences: 59808
Number of extensions: 382790
Number of successful extensions: 560
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 560
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)