Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40164
         (728 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF038608-14|AAT92087.1|  314|Caenorhabditis elegans Serpentine r...    28   7.9  

>AF038608-14|AAT92087.1|  314|Caenorhabditis elegans Serpentine
           receptor, class z protein83 protein.
          Length = 314

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 3/64 (4%)
 Frame = +1

Query: 91  NAKASDELLVIASPFINTSSVIPILSNNFNL---TLNILH*KCTCHLIALAHKTS*LFLP 261
           NA  +     I   +I   +V  ++  +F +   T+ +LH  C C  + +A   S L  P
Sbjct: 210 NAYVTSGHYYILQKYIFWQAVTALIFESFPIIFSTIQLLHGSCGCSFVVIATLVSTLITP 269

Query: 262 INLQ 273
           + +Q
Sbjct: 270 LTIQ 273


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,377,229
Number of Sequences: 27780
Number of extensions: 304925
Number of successful extensions: 483
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 472
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)