Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40164
         (728 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    26   0.32 
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    24   1.3  
AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.     23   2.2  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   6.8  
DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate r...    21   9.0  
AB006152-1|BAA24504.1|  178|Apis mellifera inositol 1,4,5-tripho...    21   9.0  

>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 26.2 bits (55), Expect = 0.32
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = -1

Query: 302 NKIKQTVCVNCRLIGKKS 249
           N  KQT+C   R+IG++S
Sbjct: 337 NAFKQTICCKTRIIGRRS 354


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 24.2 bits (50), Expect = 1.3
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = +1

Query: 22  RPTKFDNYLIIKSEYHNLDSPITNAKASDELLVIASPFIN 141
           RP   D Y    +E   +   + +   SD +L ++SPF+N
Sbjct: 362 RPQDVDKY---PAEGLEMKGQMVHCPESDSILFVSSPFLN 398


>AB072429-1|BAB83990.1|  388|Apis mellifera IP3phosphatase protein.
          Length = 388

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 14/47 (29%), Positives = 27/47 (57%)
 Frame = -1

Query: 284 VCVNCRLIGKKSHEVLCAKAIR*HVHFQCNMFSVKLKLFDRIGITLD 144
           + ++C+ +G K++E    + +   V     M S +L+LFD+I + LD
Sbjct: 45  IALHCQEVGGKNYEH-STRQVEDFVRLL--MSSEELRLFDKIRVFLD 88


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = -1

Query: 311 LNINKIKQTVCVNCRLIGKKSHEVLCAKAIR*HVHFQ 201
           L+ N +   VC  C + GK     L  K  +   HFQ
Sbjct: 361 LHGNLLPPGVCYTCDVCGKTLSTKLTLKRHKEQQHFQ 397


>DQ468657-1|ABE02558.1|  322|Apis mellifera 1,4,5-trisphosphate
           receptor protein.
          Length = 322

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +2

Query: 233 HIRLHDFSYQLIYSLHILF 289
           H+ +HD+   +  +LH+LF
Sbjct: 133 HLAMHDYPPLVSGALHLLF 151


>AB006152-1|BAA24504.1|  178|Apis mellifera inositol
           1,4,5-triphosphate recepter protein.
          Length = 178

 Score = 21.4 bits (43), Expect = 9.0
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +2

Query: 233 HIRLHDFSYQLIYSLHILF 289
           H+ +HD+   +  +LH+LF
Sbjct: 101 HLAMHDYPPLVSGALHLLF 119


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 191,361
Number of Sequences: 438
Number of extensions: 4165
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22657590
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)