Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40164
         (728 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g10750.1 68416.m01294 hypothetical protein                          27   9.6  
At2g20330.1 68415.m02374 transducin family protein / WD-40 repea...    27   9.6  

>At3g10750.1 68416.m01294 hypothetical protein 
          Length = 299

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
 Frame = +1

Query: 46  LIIKSEYHN----LDSPITNAKASDELLVIASPFINTSSVIPILSNNFNL 183
           L+I+++  N    +DS       S   LVI SP +N  S+I  L  NF++
Sbjct: 150 LVIRNKSDNVTRFIDSQSLEKNGSGRSLVIDSPGLNYLSIIDSLGGNFSI 199


>At2g20330.1 68415.m02374 transducin family protein / WD-40 repeat
           family protein similar to Transcriptional repressor
           rco-1 (SP:P78706) [Neurospora crassa]; similar to
           TUP1(GB:AF079369); contains 6 WD-40 repeats (PF00400)
          Length = 648

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 206 FQCNMFSVKLKLFDRIGITLDVFING 129
           F C   S + K+FDR G+TL  F+ G
Sbjct: 239 FLCVTGSAQAKIFDRDGLTLGEFMKG 264


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,024,348
Number of Sequences: 28952
Number of extensions: 264859
Number of successful extensions: 446
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 424
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 446
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)