Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40162
(658 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ... 41 1e-04
SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces po... 40 4e-04
SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces po... 31 0.11
SPCC1442.02 ||SPCC1450.18|DUF1760 family protein|Schizosaccharom... 26 4.2
SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa... 26 4.2
SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|... 26 5.5
SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr ... 26 5.5
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ... 25 9.6
SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces pom... 25 9.6
>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 359
Score = 41.1 bits (92), Expect = 1e-04
Identities = 15/28 (53%), Positives = 21/28 (75%)
Frame = +1
Query: 184 CGHCKQLVPIYDKLGEHFENDDDVSLPK 267
CGHCK L P+Y++LG FE+ +DV + K
Sbjct: 51 CGHCKSLAPVYEELGALFEDHNDVLIGK 78
Score = 37.1 bits (82), Expect = 0.002
Identities = 13/28 (46%), Positives = 21/28 (75%)
Frame = +1
Query: 184 CGHCKQLVPIYDKLGEHFENDDDVSLPK 267
CG+CK+L P Y+ LG+ F+N+ +V + K
Sbjct: 170 CGYCKRLAPTYETLGKVFKNEPNVEIVK 197
Score = 34.3 bits (75), Expect = 0.016
Identities = 19/62 (30%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Frame = +3
Query: 300 KITSFPTIKLYSKDNQVHD--YNGERTLAGLTKFVETDGEGAEPVPSVTEFEEEEDVPAR 473
++ SFPTIK + KD++ Y G+R+L L +++ G + P T +P
Sbjct: 211 EVASFPTIKFFPKDDKDKPELYEGDRSLESLIEYINKK-SGTQRSPDGTLLSTAGRIPTF 269
Query: 474 DE 479
DE
Sbjct: 270 DE 271
>SPAC1F5.02 |||protein disulfide isomerase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 492
Score = 39.5 bits (88), Expect = 4e-04
Identities = 14/28 (50%), Positives = 19/28 (67%)
Frame = +1
Query: 184 CGHCKQLVPIYDKLGEHFENDDDVSLPK 267
CGHCK L P Y+KL E + +D +V + K
Sbjct: 385 CGHCKNLAPTYEKLAEEYSDDSNVVVAK 412
Score = 34.3 bits (75), Expect = 0.016
Identities = 21/60 (35%), Positives = 34/60 (56%), Gaps = 2/60 (3%)
Frame = +3
Query: 303 ITSFPTIKLYSKDNQVHD--YNGERTLAGLTKFVETDGEGAEPVPSVTEFEEEEDVPARD 476
I+ FPTI + +++V+ Y G+RTL L+ F++ EP+ +E+E VPA D
Sbjct: 424 ISGFPTIMFFKANDKVNPVRYEGDRTLEDLSAFIDKHA-SFEPIK-----KEKESVPAPD 477
Score = 30.7 bits (66), Expect = 0.19
Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Frame = +1
Query: 169 VLFYR--CGHCKQLVPIYDKLGEHFEND 246
V FY CGHCK L P Y+ + E D
Sbjct: 44 VKFYAPWCGHCKALAPEYESAADELEKD 71
Score = 26.2 bits (55), Expect = 4.2
Identities = 9/32 (28%), Positives = 17/32 (53%)
Frame = +3
Query: 303 ITSFPTIKLYSKDNQVHDYNGERTLAGLTKFV 398
I +PT+ ++ Q+ Y+G R L K++
Sbjct: 92 IRGYPTLNVFKNGKQISQYSGPRKHDALVKYM 123
>SPAC13F5.05 |||thioredoxin family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 363
Score = 31.5 bits (68), Expect = 0.11
Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
Frame = +1
Query: 169 VLFYR--CGHCKQLVPIYDKLGEHFEN 243
V+FY CG+CK+LVP Y KL + +
Sbjct: 53 VVFYAPWCGYCKKLVPTYQKLASNLHS 79
Score = 29.5 bits (63), Expect = 0.45
Identities = 17/38 (44%), Positives = 23/38 (60%), Gaps = 5/38 (13%)
Frame = +3
Query: 300 KITSFPTIKLY---SKDNQVH--DYNGERTLAGLTKFV 398
++ FPTIKL SK + + DYNG+R+ L KFV
Sbjct: 101 QVQGFPTIKLVYPSSKGSSLSSTDYNGDRSYKSLQKFV 138
>SPCC1442.02 ||SPCC1450.18|DUF1760 family
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 562
Score = 26.2 bits (55), Expect = 4.2
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = +3
Query: 312 FPTIKLYSKDNQVHDYNGERTLAGLTKFVE 401
FPT+ +Q+++Y GE GL ++E
Sbjct: 526 FPTVYFTKISDQINNYEGELPTDGLKYYIE 555
>SPBC1685.08 |||histone deacetylase complex subunit
Cti6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 424
Score = 26.2 bits (55), Expect = 4.2
Identities = 14/42 (33%), Positives = 18/42 (42%)
Frame = +3
Query: 354 DYNGERTLAGLTKFVETDGEGAEPVPSVTEFEEEEDVPARDE 479
D N E T ETD E V +V E +EE ++E
Sbjct: 224 DENEENKETSTTNVAETDAPEEETVDTVEEIADEEKHSVKEE 265
>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
3|||Manual
Length = 512
Score = 25.8 bits (54), Expect = 5.5
Identities = 9/15 (60%), Positives = 11/15 (73%)
Frame = +1
Query: 370 GHWPASPSSLRPTVK 414
G+WP PSS+RP K
Sbjct: 384 GNWPNYPSSIRPLAK 398
>SPBC21B10.03c |||ataxin-2 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 791
Score = 25.8 bits (54), Expect = 5.5
Identities = 18/72 (25%), Positives = 26/72 (36%), Gaps = 1/72 (1%)
Frame = +1
Query: 211 IYDKLGEHFENDDDVSLPKSTPPPTNWNT-PRSRPSQRSNFXXXXXXXXXXXXXGHWPAS 387
++ +GE + + + P S PP WNT P S +N P
Sbjct: 516 VFKNVGEEHQGAEQIDKPFSCPP--TWNTGPNSLQQTIANSRPEGNSGSAKKAAAANPMI 573
Query: 388 PSSLRPTVKAPS 423
PS + P PS
Sbjct: 574 PSIVLPNSAMPS 585
>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 726
Score = 25.0 bits (52), Expect = 9.6
Identities = 10/24 (41%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Frame = +1
Query: 166 FVLFY--RCGHCKQLVPIYDKLGE 231
F+ +Y CG CK+L P++D + E
Sbjct: 46 FIKYYLPSCGACKRLGPMWDNMVE 69
>SPAC222.14c |||GTP binding protein Sey1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 762
Score = 25.0 bits (52), Expect = 9.6
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +2
Query: 467 CQRRVINTWPRRPL*DFHRIVLYSYNYLLFILTNICILFARLF 595
C+R VINT R P + +++ +N + IL N + +F
Sbjct: 647 CKRSVINTTTRIPPYFWVLLIVLGWNEFMAILRNPFVFMILMF 689
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,277,028
Number of Sequences: 5004
Number of extensions: 42050
Number of successful extensions: 155
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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