Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40162
(658 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0161 + 13337265-13337297,13337880-13338017,13338211-133383... 39 0.004
02_01_0001 - 3864-4049,4861-4917,5514-5648,5710-5808,5884-5952,6... 38 0.005
05_01_0410 - 3234455-3234466,3234851-3234950,3235037-3235161,323... 37 0.012
11_01_0618 - 4941906-4942118,4942231-4942343,4942534-4942651,494... 35 0.066
06_01_0667 + 4878784-4878900,4879016-4879118,4879256-4879341,487... 33 0.15
02_04_0214 - 20976977-20977171,20977499-20977611,20978041-209781... 33 0.15
03_02_0621 - 9923163-9923245,9924163-9924338,9924437-9924495,992... 32 0.46
04_03_1011 - 21708503-21708544,21708689-21708898,21709000-217091... 30 1.9
09_04_0345 + 16876489-16876614,16876718-16876876,16877989-168781... 29 3.3
02_03_0172 + 15965342-15965711,15967757-15967849,15967976-159680... 29 3.3
03_05_0882 + 28467691-28467730,28468386-28468675,28469262-284694... 29 4.3
>01_03_0161 +
13337265-13337297,13337880-13338017,13338211-13338308,
13338395-13338450,13338664-13338781,13338889-13338916,
13339021-13339112,13339321-13339477,13339569-13339693,
13339785-13339884,13339991-13340059
Length = 337
Score = 38.7 bits (86), Expect = 0.004
Identities = 15/33 (45%), Positives = 20/33 (60%)
Frame = +1
Query: 169 VLFYRCGHCKQLVPIYDKLGEHFENDDDVSLPK 267
+ RCGHCK+L P Y+KLG F+ V + K
Sbjct: 25 IYLVRCGHCKKLAPEYEKLGASFKKAKSVFIAK 57
Score = 37.5 bits (83), Expect = 0.009
Identities = 14/24 (58%), Positives = 17/24 (70%)
Frame = +1
Query: 184 CGHCKQLVPIYDKLGEHFENDDDV 255
CGHCK L PIY+KL ++ DD V
Sbjct: 149 CGHCKHLAPIYEKLASVYKLDDGV 172
Score = 29.5 bits (63), Expect = 2.5
Identities = 12/37 (32%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +3
Query: 303 ITSFPTIKLYSKDN-QVHDYNGERTLAGLTKFVETDG 410
++ +PTI+ + K + + Y G+R+ L +FV T+G
Sbjct: 72 VSGYPTIQWFPKGSLEPKKYEGQRSAEALAEFVNTEG 108
>02_01_0001 -
3864-4049,4861-4917,5514-5648,5710-5808,5884-5952,
6419-6493,6619-6705,6873-6953,7021-7163,7262-7430,
7538-7667,7753-8255
Length = 577
Score = 38.3 bits (85), Expect = 0.005
Identities = 17/43 (39%), Positives = 25/43 (58%)
Frame = +1
Query: 184 CGHCKQLVPIYDKLGEHFENDDDVSLPKSTPPPTNWNTPRSRP 312
CGHC++L P Y+KLG+H D + + K T PR++P
Sbjct: 458 CGHCQELEPTYNKLGKHLRGIDSLVIAKM--DGTANEHPRAKP 498
>05_01_0410 -
3234455-3234466,3234851-3234950,3235037-3235161,
3235244-3235400,3235644-3235735,3235828-3235855,
3235949-3236066,3236411-3236466,3236556-3236653,
3236864-3236948,3237428-3237600
Length = 347
Score = 37.1 bits (82), Expect = 0.012
Identities = 13/24 (54%), Positives = 17/24 (70%)
Frame = +1
Query: 184 CGHCKQLVPIYDKLGEHFENDDDV 255
CGHCK L PIY+KL ++ D+ V
Sbjct: 178 CGHCKHLAPIYEKLASVYKQDEGV 201
Score = 36.3 bits (80), Expect = 0.021
Identities = 14/28 (50%), Positives = 18/28 (64%)
Frame = +1
Query: 184 CGHCKQLVPIYDKLGEHFENDDDVSLPK 267
CGHCK+L P Y+KLG F+ V + K
Sbjct: 59 CGHCKKLAPEYEKLGASFKKAKSVLIAK 86
Score = 31.5 bits (68), Expect = 0.61
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Frame = +3
Query: 303 ITSFPTIKLYSKDNQV-HDYNGERTLAGLTKFV 398
++ FPT+K + K N+ DY+G R L KF+
Sbjct: 220 VSGFPTLKFFPKGNKAGEDYDGGRELDDFVKFI 252
>11_01_0618 -
4941906-4942118,4942231-4942343,4942534-4942651,
4942762-4942881,4942964-4943101,4943392-4943517,
4943659-4943847,4943951-4944238,4944344-4944374,
4945014-4945216
Length = 512
Score = 34.7 bits (76), Expect = 0.066
Identities = 13/28 (46%), Positives = 18/28 (64%)
Frame = +1
Query: 184 CGHCKQLVPIYDKLGEHFENDDDVSLPK 267
CGHCK+L PI D+ ++D DV + K
Sbjct: 414 CGHCKKLAPILDEAATTLKSDKDVVIAK 441
Score = 30.7 bits (66), Expect = 1.1
Identities = 10/22 (45%), Positives = 13/22 (59%)
Frame = +1
Query: 184 CGHCKQLVPIYDKLGEHFENDD 249
CGHCK+L P Y+K + D
Sbjct: 69 CGHCKKLAPEYEKAAQELSKHD 90
>06_01_0667 +
4878784-4878900,4879016-4879118,4879256-4879341,
4879434-4879496,4879589-4879831,4880639-4880728,
4881403-4881600
Length = 299
Score = 33.5 bits (73), Expect = 0.15
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = +1
Query: 235 FENDDDVSLPKSTPPPTNWNTPRSRPSQRS 324
F++D D L +STPPP +W +P + + RS
Sbjct: 137 FQDDIDAGLCQSTPPPPSWPSPPAAANARS 166
>02_04_0214 -
20976977-20977171,20977499-20977611,20978041-20978158,
20978585-20978701,20978836-20978973,20979193-20979318,
20979827-20980015,20980539-20980863,20980977-20981134
Length = 492
Score = 33.5 bits (73), Expect = 0.15
Identities = 11/28 (39%), Positives = 20/28 (71%)
Frame = +1
Query: 184 CGHCKQLVPIYDKLGEHFENDDDVSLPK 267
CGHC++L PI +++ ++D+DV + K
Sbjct: 400 CGHCQKLAPILEEVAVSLKDDEDVVIAK 427
>03_02_0621 -
9923163-9923245,9924163-9924338,9924437-9924495,
9924952-9924984,9925060-9925185
Length = 158
Score = 31.9 bits (69), Expect = 0.46
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 303 ITSFPTIKLYSKDNQVHDYNGERTLAGLTKFVETDGEGA 419
I S+PT K++ + +V Y G R + L FV + E A
Sbjct: 112 IHSYPTFKVFYEGEEVAKYKGPRNVESLKNFVSDEAEKA 150
Score = 27.5 bits (58), Expect = 9.9
Identities = 9/26 (34%), Positives = 16/26 (61%)
Frame = +1
Query: 184 CGHCKQLVPIYDKLGEHFENDDDVSL 261
C HCK L +++ LG+ E D++ +
Sbjct: 70 CKHCKNLGTLWEDLGKVMEGADEIEI 95
>04_03_1011 -
21708503-21708544,21708689-21708898,21709000-21709112,
21709232-21709349,21709386-21709412,21709671-21709808,
21710069-21710194,21710279-21710467,21710598-21710885,
21710937-21711024,21711120-21711298
Length = 505
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/59 (28%), Positives = 26/59 (44%), Gaps = 1/59 (1%)
Frame = +3
Query: 303 ITSFPTIKLYSKDNQVHDYNGERTLAGLTKFV-ETDGEGAEPVPSVTEFEEEEDVPARD 476
+ +PTI YS + Y+G RT + F+ E G A +V E + + V D
Sbjct: 435 VEGYPTIYFYSSSGNLLSYDGARTAEEIISFINENRGPKAGAAAAVDEKTQIDAVEEED 493
Score = 27.9 bits (59), Expect = 7.5
Identities = 8/28 (28%), Positives = 17/28 (60%)
Frame = +1
Query: 184 CGHCKQLVPIYDKLGEHFENDDDVSLPK 267
CGHC++ I +++ ++D D+ + K
Sbjct: 394 CGHCRKFALILEEIAVSLQDDQDIVIAK 421
>09_04_0345 +
16876489-16876614,16876718-16876876,16877989-16878102,
16878701-16878882,16879142-16879241,16879597-16879638,
16879818-16879994,16880084-16880175,16880633-16880779,
16880832-16881036
Length = 447
Score = 29.1 bits (62), Expect = 3.3
Identities = 9/13 (69%), Positives = 12/13 (92%)
Frame = +1
Query: 184 CGHCKQLVPIYDK 222
CGHC+QL PI++K
Sbjct: 59 CGHCQQLTPIWEK 71
>02_03_0172 +
15965342-15965711,15967757-15967849,15967976-15968060,
15968749-15968824,15968992-15969120,15969473-15969571,
15969661-15969762,15970257-15970415,15970507-15970602,
15971497-15971647,15971782-15971893,15972004-15972074,
15972548-15972984,15973421-15973492,15973713-15973810,
15974350-15974425,15975512-15975634,15975776-15975844
Length = 805
Score = 29.1 bits (62), Expect = 3.3
Identities = 20/51 (39%), Positives = 30/51 (58%), Gaps = 2/51 (3%)
Frame = -2
Query: 648 RTTSIDQQ--LQHILENNSTNSLANKMQIFVSIKSK*L*LYSTILWKSQRG 502
RTTSID Q L I+E + +S A +Q F SIK + + LW++++G
Sbjct: 223 RTTSIDWQTSLATIIEWSPYSSEAELLQEFSSIKEQGTRIIIYNLWENEQG 273
>03_05_0882 +
28467691-28467730,28468386-28468675,28469262-28469411,
28470126-28470214,28470331-28470440,28470545-28470639,
28471110-28471162,28471374-28471539,28471909-28472001,
28472304-28472432,28472549-28472668,28472862-28472942,
28473495-28473602,28473895-28474038,28474120-28474218,
28474300-28474379,28474830-28474922,28475197-28475320
Length = 687
Score = 28.7 bits (61), Expect = 4.3
Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +3
Query: 285 ELEHTKITSFPTIKLYSKDNQVHDYNGERTLA-GLTKFVETDGEGAEPVPSVTEFEEEED 461
ELE TK + ++LY K V DY+ E+ ++ G K+ E G+ V + + E+D
Sbjct: 523 ELEKTKADN---VQLYGKIRYVQDYSHEKIVSRGPKKYAEDVESGSSDVETKYKKMYEDD 579
Query: 462 V 464
+
Sbjct: 580 I 580
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,116,962
Number of Sequences: 37544
Number of extensions: 286042
Number of successful extensions: 1001
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 953
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1001
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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