Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40162
         (658 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_42595| Best HMM Match : Thioredoxin (HMM E-Value=0)                 54   1e-07
SB_55398| Best HMM Match : Thioredoxin (HMM E-Value=3.6e-21)           41   8e-04
SB_30398| Best HMM Match : Thioredoxin (HMM E-Value=0)                 41   0.001
SB_35157| Best HMM Match : Thioredoxin (HMM E-Value=0)                 36   0.038
SB_48081| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.20 
SB_46929| Best HMM Match : Thioredoxin (HMM E-Value=0)                 33   0.27 
SB_30498| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.36 
SB_45978| Best HMM Match : Thioredoxin (HMM E-Value=4.19997e-41)       32   0.47 
SB_38445| Best HMM Match : ERp29 (HMM E-Value=2.2e-19)                 31   0.83 
SB_20276| Best HMM Match : Thioredoxin (HMM E-Value=9.8e-06)           31   0.83 
SB_15183| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_25332| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.7  
SB_2584| Best HMM Match : SPRY (HMM E-Value=0.014)                     24   8.8  

>SB_42595| Best HMM Match : Thioredoxin (HMM E-Value=0)
          Length = 536

 Score = 53.6 bits (123), Expect = 1e-07
 Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 4/69 (5%)
 Frame = +3

Query: 282 NELEHTKITSFPTIKLYSKDNQVHDYNGERTLAGLTKFVETDGE-GAEPVPSVTEFEEE- 455
           NE+E  K+ SFPTIK + K+ +  DYNG RTL    KF+E+ G+ G EP     E   E 
Sbjct: 447 NEVEGVKVHSFPTIKYFPKEGEAVDYNGGRTLDDFVKFLESGGKAGNEPAAEGEEPPPEG 506

Query: 456 --EDVPARD 476
             +D+P  +
Sbjct: 507 EGDDLPPEE 515



 Score = 44.4 bits (100), Expect = 8e-05
 Identities = 19/36 (52%), Positives = 26/36 (72%), Gaps = 2/36 (5%)
 Frame = +1

Query: 166 FVLFYR--CGHCKQLVPIYDKLGEHFENDDDVSLPK 267
           FV FY   CGHCKQL PI+D+LGE +++  D+ + K
Sbjct: 406 FVEFYAPWCGHCKQLAPIWDQLGEKYKDHADIVVAK 441


>SB_55398| Best HMM Match : Thioredoxin (HMM E-Value=3.6e-21)
          Length = 186

 Score = 41.1 bits (92), Expect = 8e-04
 Identities = 18/43 (41%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
 Frame = +1

Query: 163 HFVLFYR--CGHCKQLVPIYDKLGEHFENDDDVSLPKSTPPPT 285
           HFV FY   C HC +L PI+++L E F+++ D+++ K    PT
Sbjct: 109 HFVKFYAPWCIHCIKLAPIWERLAEDFKDNADITISKINGYPT 151



 Score = 30.3 bits (65), Expect = 1.4
 Identities = 12/34 (35%), Positives = 20/34 (58%)
 Frame = +3

Query: 297 TKITSFPTIKLYSKDNQVHDYNGERTLAGLTKFV 398
           +KI  +PT+ L+    Q  +Y+G R L  L +F+
Sbjct: 144 SKINGYPTLMLFKDGVQKKEYSGNRDLDSLYRFI 177


>SB_30398| Best HMM Match : Thioredoxin (HMM E-Value=0)
          Length = 295

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 15/28 (53%), Positives = 19/28 (67%)
 Frame = +1

Query: 184 CGHCKQLVPIYDKLGEHFENDDDVSLPK 267
           CGHCKQL P Y++LGE +    DV + K
Sbjct: 51  CGHCKQLAPTYEQLGEAYTQSSDVIIAK 78


>SB_35157| Best HMM Match : Thioredoxin (HMM E-Value=0)
          Length = 1056

 Score = 35.5 bits (78), Expect = 0.038
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +1

Query: 184 CGHCKQLVPIYDKLGEHFENDDDVSLPK 267
           CGHCK L P Y++LGE  ++  D+ + K
Sbjct: 892 CGHCKSLEPKYNELGEKLQDVKDIVIAK 919



 Score = 33.1 bits (72), Expect = 0.20
 Identities = 13/54 (24%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +3

Query: 303 ITSFPTIKLYSKDNQVHDYNGERTLAGLTKFVETD-GEGAEPVPSVTEFEEEED 461
           ++ +PT+K++       DY+G R  +G+ ++++   G  +  + SV   E++ D
Sbjct: 611 VSGYPTLKIFRNGEMSKDYDGPRDSSGIIRYMKKQAGPSSVEIKSVDHLEKKLD 664



 Score = 31.1 bits (67), Expect = 0.83
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +1

Query: 184 CGHCKQLVPIYDKLGEHF-ENDDDVSLPK 267
           CGHCK+L P Y+   E   +ND  V L K
Sbjct: 567 CGHCKRLAPEYETAAEALKKNDPPVPLAK 595


>SB_48081| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 645

 Score = 33.1 bits (72), Expect = 0.20
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = +1

Query: 184 CGHCKQLVPIYDKLGEHFENDD 249
           CGHCKQL P Y+K  +  +  D
Sbjct: 205 CGHCKQLAPEYEKAAQELQKHD 226



 Score = 28.7 bits (61), Expect = 4.4
 Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
 Frame = +1

Query: 184 CGHCKQLVPIYDKLGEHFE-NDDDVSLPK 267
           CGHCK L P Y K  +  + ND  V   K
Sbjct: 90  CGHCKSLAPEYAKAAKKMKLNDPPVPFAK 118



 Score = 27.9 bits (59), Expect = 7.7
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +1

Query: 202 LVPIYDKLGEHFENDDDVSLPK 267
           L P + KLG+HF ND ++ + K
Sbjct: 559 LEPTFKKLGKHFRNDKNIVIAK 580


>SB_46929| Best HMM Match : Thioredoxin (HMM E-Value=0)
          Length = 362

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 14/29 (48%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +3

Query: 303 ITSFPTIKLYSKD-NQVHDYNGERTLAGL 386
           I  FPTIK++  + N   DYNG+RT  G+
Sbjct: 13  IRGFPTIKIFGANKNSPQDYNGQRTAQGI 41


>SB_30498| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 564

 Score = 32.3 bits (70), Expect = 0.36
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = +3

Query: 291 EHTKITSFPTIKLYSKDNQVHDYNGERTLAGLTKFVET 404
           ++ KI  +P++KL+       DY G+RT A L  ++E+
Sbjct: 89  DNFKIEGYPSVKLFKFGKYAGDYIGQRTDAALVNYMES 126


>SB_45978| Best HMM Match : Thioredoxin (HMM E-Value=4.19997e-41)
          Length = 271

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 15/31 (48%), Positives = 19/31 (61%), Gaps = 3/31 (9%)
 Frame = +1

Query: 160 EH-FVLFYR--CGHCKQLVPIYDKLGEHFEN 243
           EH  V+FY   CGHCK   P Y+K  E F++
Sbjct: 165 EHVLVMFYAPWCGHCKNAKPKYEKAAETFKD 195



 Score = 27.9 bits (59), Expect = 7.7
 Identities = 13/54 (24%), Positives = 29/54 (53%)
 Frame = +3

Query: 300 KITSFPTIKLYSKDNQVHDYNGERTLAGLTKFVETDGEGAEPVPSVTEFEEEED 461
           ++  +PT++ Y     V +Y+G+R    L  F+E   E   P+  + + ++E++
Sbjct: 217 EVNGYPTLRYYLYGKFVVEYDGDRVTEDLISFME---EPPLPLSDIPKDQQEKN 267


>SB_38445| Best HMM Match : ERp29 (HMM E-Value=2.2e-19)
          Length = 335

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 12/37 (32%), Positives = 24/37 (64%), Gaps = 2/37 (5%)
 Frame = +1

Query: 166 FVLFYRC--GHCKQLVPIYDKLGEHFENDDDVSLPKS 270
           F+ FY     HC++++ I+D++ + F + DD+ + KS
Sbjct: 47  FIFFYAPWDDHCQRILQIFDQVADEFADRDDIVVGKS 83


>SB_20276| Best HMM Match : Thioredoxin (HMM E-Value=9.8e-06)
          Length = 70

 Score = 31.1 bits (67), Expect = 0.83
 Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 1/29 (3%)
 Frame = +1

Query: 184 CGHCKQLVPIYDKLGEHF-ENDDDVSLPK 267
           CGHCK+L P Y+   E   +ND  V L K
Sbjct: 42  CGHCKRLAPEYETAAEALKKNDPPVPLAK 70


>SB_15183| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1488

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 345  QVHDYNGERTLAGLTKFVETDGEGAEPVPSVTEF 446
            +  DYNG++   G+ K + T     EP+ S + F
Sbjct: 1338 KTEDYNGKKKAIGVNKQLRTSSHRREPLVSTSNF 1371


>SB_25332| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 41

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/32 (34%), Positives = 18/32 (56%)
 Frame = +3

Query: 303 ITSFPTIKLYSKDNQVHDYNGERTLAGLTKFV 398
           I  +PT+ L+    Q  +Y+G R L  L +F+
Sbjct: 1   INGYPTLMLFKDGVQKKEYSGNRDLDSLYRFI 32


>SB_2584| Best HMM Match : SPRY (HMM E-Value=0.014)
          Length = 408

 Score = 24.2 bits (50), Expect(2) = 8.8
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = +1

Query: 217 DKLGEHFENDDDVSLPK 267
           +K GEHF   DD ++ K
Sbjct: 97  EKFGEHFPGQDDANIAK 113



 Score = 21.8 bits (44), Expect(2) = 8.8
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +1

Query: 256 SLPKSTPPPTNWNTPR 303
           SL + T PP  W T R
Sbjct: 132 SLSEPTSPPETWRTSR 147


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,238,100
Number of Sequences: 59808
Number of extensions: 319110
Number of successful extensions: 1008
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1007
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)