Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40162
         (658 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.48 
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    23   1.9  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    23   3.4  
AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase prec...    22   5.9  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.4 bits (53), Expect = 0.48
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +3

Query: 384 LTKFVETDGEGAEPVPSVTEFEEEEDVPARDE 479
           L K  + DGEGA+      E EEEED   + E
Sbjct: 266 LRKRRQNDGEGADDRDDDEENEEEEDGRGQSE 297



 Score = 23.0 bits (47), Expect = 2.6
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +2

Query: 254 YHCQNRRHRQRTGTHQDHVLPNDQ 325
           +H QN  H  ++   QDH  P  Q
Sbjct: 142 HHLQNHHHHLQSTAVQDHHRPYQQ 165


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +3

Query: 327 LYSKDNQVHDYNGERTLAGLTKFVE 401
           LY  D  +HD++ +  LAG  + VE
Sbjct: 338 LYINDLSMHDFSRDLMLAGTQQSVE 362


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 9/29 (31%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = +2

Query: 86  KKTYCFYREVVFGRAHLP-EYLSPNMSIS 169
           +K + + RE+ F  + LP E L P+ +++
Sbjct: 421 EKPFVYVREIAFSESCLPEEILCPHFNVT 449


>AF205594-1|AAQ13840.1|  156|Apis mellifera acid phosphatase
           precursor protein.
          Length = 156

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 8/21 (38%), Positives = 12/21 (57%)
 Frame = +2

Query: 542 NYLLFILTNICILFARLFVEL 604
           NY +F+  N  + F R  +EL
Sbjct: 20  NYFIFLYFNSLVRFRRFTIEL 40


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,287
Number of Sequences: 438
Number of extensions: 2673
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19734030
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)