Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40161
         (650 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    26   0.23 
AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor ...    24   1.2  
U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.     22   3.8  
U81038-1|AAB39355.1|  412|Tribolium castaneum transcription fact...    22   3.8  
AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.           22   3.8  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    21   6.7  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    21   8.8  
AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger tran...    21   8.8  

>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 26.2 bits (55), Expect = 0.23
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 556 RSGRRQYNYMKTRRNVCLILENFHDPTVPNR 648
           R+ R +YN     RN  ++++NF+D    NR
Sbjct: 395 RNNRDEYNVCFRPRNNSILIKNFNDSPESNR 425


>AJ005083-1|CAB65469.1|  585|Tribolium castaneum signal receptor
           protein protein.
          Length = 585

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = +2

Query: 410 YGNEFDGDDCVIG 448
           Y  EFDG+DC +G
Sbjct: 509 YACEFDGNDCSLG 521


>U81040-1|AAB39356.1|  283|Tribolium castaneum TC Deformed protein.
          Length = 283

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 12/43 (27%), Positives = 17/43 (39%)
 Frame = -1

Query: 536 FWPRSRSKASPEARHQSYPNLNNLQIPVCIRSRNHPHRTHSRN 408
           + P+  S   P   HQ  P + +   P+C      P  T S N
Sbjct: 85  YHPQLHSHHGPPIHHQIRPPILHDTQPMCESLNTQPPVTSSSN 127


>U81038-1|AAB39355.1|  412|Tribolium castaneum transcription factor
           Deformed protein.
          Length = 412

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 12/43 (27%), Positives = 17/43 (39%)
 Frame = -1

Query: 536 FWPRSRSKASPEARHQSYPNLNNLQIPVCIRSRNHPHRTHSRN 408
           + P+  S   P   HQ  P + +   P+C      P  T S N
Sbjct: 85  YHPQLHSHHGPPIHHQIRPPILHDTQPMCESLNTQPPVTSSSN 127


>AF321227-3|AAK16423.1|  412|Tribolium castaneum Dfd protein.
          Length = 412

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 12/43 (27%), Positives = 17/43 (39%)
 Frame = -1

Query: 536 FWPRSRSKASPEARHQSYPNLNNLQIPVCIRSRNHPHRTHSRN 408
           + P+  S   P   HQ  P + +   P+C      P  T S N
Sbjct: 85  YHPQLHSHHGPPIHHQIRPPILHDTQPMCESLNTQPPVTSSSN 127


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 6/18 (33%), Positives = 13/18 (72%)
 Frame = +2

Query: 383 DGGSKGNAHYGNEFDGDD 436
           +GG +G+   G++ +GD+
Sbjct: 15  EGGEEGSPEEGDKLEGDE 32


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +2

Query: 266 VCITQLRNAVRFKRQLI 316
           VC++QLRNA +    ++
Sbjct: 468 VCVSQLRNAKKVDEAIL 484


>AJ621748-1|CAF21851.1|  228|Tribolium castaneum zinc finger
           transcription factor protein.
          Length = 228

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 10/30 (33%), Positives = 14/30 (46%)
 Frame = -1

Query: 344 SEHSICPGTGSIVV*IVLHSATELCTLRRC 255
           S  S C   G  V+     +A + C LR+C
Sbjct: 37  SSISECKNNGECVINKKNRTACKACRLRKC 66


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 152,473
Number of Sequences: 336
Number of extensions: 3312
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 16760905
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)