Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40161
         (650 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP22H7.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    28   1.3  
SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr...    27   3.1  
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    26   4.1  
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S...    26   4.1  
SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin Nup132|Schizosa...    26   5.4  
SPAPB8E5.02c |rpn502|rpn5, rpn5-b|19S proteasome regulatory subu...    25   7.2  
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr...    25   7.2  
SPAC24C9.03 |mvd1||diphosphomevalonate decarboxylase |Schizosacc...    25   7.2  
SPAC1420.03 |rpn501|rpn5-a, rpn5|19S proteasome regulatory subun...    25   7.2  
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.5  
SPBC28F2.08c |||HRD ubiquitin ligase complex subunit |Schizosacc...    25   9.5  
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    25   9.5  

>SPBP22H7.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 255

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -1

Query: 239 YINPIAVFNHVTVHLYLPHPGVFSPKTLPTNQFQ 138
           +I P   F  +T+ L+LP   ++S  TLP+ +F+
Sbjct: 151 FITPALYFT-LTLILFLPRRNIYSISTLPSQRFE 183


>SPAC6C3.02c |||CHCH domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 172

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -3

Query: 444 ITQSSPSNSFP*CAFPFEPPSTRSNS 367
           + QSS SNS P  A+   PPST ++S
Sbjct: 100 VPQSSYSNSVPEAAYGSAPPSTFASS 125


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 24/73 (32%), Positives = 35/73 (47%), Gaps = 2/73 (2%)
 Frame = -1

Query: 545 RVSFWPRSRSKASPEARHQSYPNLNNLQIPVCIRSRNHPHRTHSRNARFPS--NHHRQDQ 372
           R S+ PRS   +   + H S  + +  + PV  RSR+    + S  +R PS  + HR D 
Sbjct: 117 RRSYSPRSDYGSRSPSPHSSVDS-HQSRSPV--RSRDRDRSSRSSRSRHPSSRSRHRYDD 173

Query: 371 IHSLLRYYFSEHS 333
            +S    Y S HS
Sbjct: 174 -YSRSPPYSSRHS 185


>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
           Mde10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 512

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
 Frame = +2

Query: 290 AVRFKRQLILSQDKLNAL---KNNIAKGNEFDLVDGGSK 397
           AV    ++IL+    N L   KNN++K NE  L D GSK
Sbjct: 12  AVSSYAEIILAHSDENLLSRTKNNLSKWNENRLYDYGSK 50


>SPAC1805.04 |nup132|Nup133b, Nup133b|nucleoporin
           Nup132|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1162

 Score = 25.8 bits (54), Expect = 5.4
 Identities = 11/31 (35%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -1

Query: 254 STFPGYINPIAVFNHVTVHLY-LPHPGVFSP 165
           STF   +  + +FN+ ++H+  L  P +FSP
Sbjct: 220 STFSTILQKMKIFNYPSIHIIALKSPPLFSP 250


>SPAPB8E5.02c |rpn502|rpn5, rpn5-b|19S proteasome regulatory subunit
           Rpn502|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 443

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +2

Query: 272 ITQLRNAVRFKRQLILSQDKLNALKNNIAK 361
           IT+L   +   RQLI+ ++ +N+++  +AK
Sbjct: 414 ITELLGKLEKVRQLIIKEEMMNSIQQAVAK 443


>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1250

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -3

Query: 396 FEPPSTRSNSFPFAILFFRAFNLSWDR 316
           F PP+   +S P  I+F++  ++ W R
Sbjct: 331 FHPPAVVLSSNPKDIVFYKGIDIQWAR 357


>SPAC24C9.03 |mvd1||diphosphomevalonate decarboxylase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 393

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 15/49 (30%), Positives = 22/49 (44%)
 Frame = +2

Query: 266 VCITQLRNAVRFKRQLILSQDKLNALKNNIAKGNEFDLVDGGSKGNAHY 412
           VC+ +LR A     +     DK+ ALK ++   N F    G +   A Y
Sbjct: 80  VCVEELRKARLDLEEENDDLDKIGALKLHVVSENNFPTAAGLASSAAGY 128


>SPAC1420.03 |rpn501|rpn5-a, rpn5|19S proteasome regulatory subunit
           Rpn501|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 443

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +2

Query: 272 ITQLRNAVRFKRQLILSQDKLNALKNNIAK 361
           IT+L   +   RQLI+ ++ +N+++  +AK
Sbjct: 414 ITELLGKLEKVRQLIIKEEMMNSIQQAVAK 443


>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 536

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = -3

Query: 237 YQSHSSL*SCYRTPLLAPSRCIQSKDTSYKPIPDNSS 127
           Y S ++L S  ++ LL+P+    S   +Y P  DN S
Sbjct: 481 YGSRAALSSRSQSNLLSPTSTGASNQPNYSPFADNPS 517


>SPBC28F2.08c |||HRD ubiquitin ligase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 713

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 17/73 (23%), Positives = 27/73 (36%)
 Frame = -1

Query: 566 LPLLSLGRVSFWPRSRSKASPEARHQSYPNLNNLQIPVCIRSRNHPHRTHSRNARFPSNH 387
           L L  +  +SF P +R  A     H+    L NL   +       P  ++ +   FP+N 
Sbjct: 414 LELFDVKTISFDPLTRHFA-----HRLSAELGNLMSQILAAKDRDPSTSYLKTVIFPTNE 468

Query: 386 HRQDQIHSLLRYY 348
                    + YY
Sbjct: 469 QTHRNARIAMNYY 481


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 16/40 (40%), Positives = 19/40 (47%)
 Frame = -3

Query: 453 LHPITQSSPSNSFP*CAFPFEPPSTRSNSFPFAILFFRAF 334
           L  I   SP++    C+F FE PSTR  S    I  F  F
Sbjct: 211 LRSIRAGSPNSV---CSFQFEIPSTRPPSLDQLIHLFNDF 247


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,698,442
Number of Sequences: 5004
Number of extensions: 55984
Number of successful extensions: 183
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)