Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40161
         (650 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0627 - 16342211-16342264,16342332-16342412,16342751-163428...    28   5.6  
01_02_0092 + 11057604-11057717,11058998-11059531,11060036-110601...    28   5.6  
11_03_0165 - 11009513-11010895                                         27   9.8  
09_01_0149 + 2240183-2241133                                           27   9.8  
05_05_0190 - 23110152-23112137                                         27   9.8  

>05_03_0627 -
           16342211-16342264,16342332-16342412,16342751-16342849,
           16343660-16343770,16343964-16344116,16344741-16344881,
           16345456-16345513,16345852-16345967,16346292-16346405,
           16346496-16346557,16348788-16348930,16349030-16349097,
           16349200-16349379,16349835-16350013,16350447-16350636,
           16350920-16350978,16351421-16351574,16352133-16352158,
           16352567-16353014
          Length = 811

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 17/61 (27%), Positives = 29/61 (47%)
 Frame = +2

Query: 242 RGK*SICEVCITQLRNAVRFKRQLILSQDKLNALKNNIAKGNEFDLVDGGSKGNAHYGNE 421
           RGK  + E  I   +  VR      +   K N+ K+ +A  + F+ V+G  + +A   N+
Sbjct: 151 RGKDFVHEAVIAGNKQLVRSSSNRRVGIIKPNSPKSPVASASAFESVEGSDEDDAKQPND 210

Query: 422 F 424
           F
Sbjct: 211 F 211


>01_02_0092 +
           11057604-11057717,11058998-11059531,11060036-11060101,
           11060201-11060367,11060445-11060592,11060673-11060763,
           11060850-11061199,11061284-11061388,11061490-11061789
          Length = 624

 Score = 28.3 bits (60), Expect = 5.6
 Identities = 16/43 (37%), Positives = 22/43 (51%)
 Frame = -1

Query: 242 GYINPIAVFNHVTVHLYLPHPGVFSPKTLPTNQFQTTAANAHR 114
           G I+ +  F H+  +  L   G  SP+TL T+QF  T A   R
Sbjct: 427 GSISALQPFVHLNTNGTLRAAGGVSPRTLKTDQFLRTIAPQQR 469


>11_03_0165 - 11009513-11010895
          Length = 460

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 209 VTVHLYLPHPGVFSPKTLPTNQFQTTAANAHRATS 105
           + +HL  P PG+++ KT    Q Q   A +H A +
Sbjct: 1   MAIHLTNPPPGLYATKTPSQQQQQHRPAGSHAAAA 35


>09_01_0149 + 2240183-2241133
          Length = 316

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 3/67 (4%)
 Frame = -2

Query: 343 QSIQFVLGQDQLSFKSYCIPQLSYAHFADALLSPGISIP*QSLIMLPYTSTCPIQVYS-- 170
           Q + F       S   Y +P+L        L  P I+I   +++ + Y +   + +YS  
Sbjct: 109 QCVGFFAASSTYSGDRYSLPELLRKAMKGNLKGPLITIAMVTVLRVTYMALLGVLIYSVM 168

Query: 169 -VQRHFL 152
            VQRH+L
Sbjct: 169 QVQRHYL 175


>05_05_0190 - 23110152-23112137
          Length = 661

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -1

Query: 524 SRSKASPEARHQSYPNLNNLQIPVCIR 444
           SR K+SPEARH  Y       +  CI+
Sbjct: 627 SRLKSSPEARHDLYIKYTPEDVEACIQ 653


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,124,068
Number of Sequences: 37544
Number of extensions: 355400
Number of successful extensions: 894
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 874
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 893
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)