Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40161
         (650 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38309| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.3  
SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_30536| Best HMM Match : fn3 (HMM E-Value=0.079)                     28   5.7  
SB_22690| Best HMM Match : Collagen (HMM E-Value=0.042)                28   7.6  
SB_15758| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.6  

>SB_38309| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 218

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 4/29 (13%)
 Frame = +2

Query: 365 NEFDLVDG----GSKGNAHYGNEFDGDDC 439
           +E+D+ DG    GS G    GNE+D +DC
Sbjct: 32  DEYDIKDGYDKYGSHGETDDGNEYDNEDC 60


>SB_5192| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4865

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 18/56 (32%), Positives = 29/56 (51%), Gaps = 3/56 (5%)
 Frame = -1

Query: 521  RSKASPEARH-QSYPNLNNLQI--PVCIRSRNHPHRTHSRNARFPSNHHRQDQIHS 363
            R+K SP  R  +S    N  Q+  P C+   N   +  ++NAR P N  + DQ+++
Sbjct: 1089 RNKYSPNVRMTKSQKESNEAQLFTPKCVH--NISGKEKAKNARAPDNRQKTDQLYN 1142


>SB_12670| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1272

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 19/53 (35%), Positives = 28/53 (52%)
 Frame = -1

Query: 554 SLGRVSFWPRSRSKASPEARHQSYPNLNNLQIPVCIRSRNHPHRTHSRNARFP 396
           S  R S + RSRS+ SP+ R +SY      + P   R R+ P RT   +++ P
Sbjct: 623 SRSRSSSYSRSRSR-SPDRRKRSYSPPPRRRSPFRERRRSPPRRTSRWSSQSP 674


>SB_30536| Best HMM Match : fn3 (HMM E-Value=0.079)
          Length = 754

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 12/21 (57%), Positives = 13/21 (61%)
 Frame = -3

Query: 450 HPITQSSPSNSFP*CAFPFEP 388
           HPI  S+PSN  P CA  F P
Sbjct: 351 HPIGPSAPSNPVPLCAKDFAP 371


>SB_22690| Best HMM Match : Collagen (HMM E-Value=0.042)
          Length = 593

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = +2

Query: 350 NIAKGNEFDLVDGGSKGNAHYGNEFDGDD 436
           N + G++ D  D GS GNA  G++ DG D
Sbjct: 72  NGSDGDDDDSGDDGSDGNAGNGSDNDGSD 100


>SB_15758| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 144

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = -1

Query: 404 RFPSNH--HRQDQIHSLLRYYFSEHSICPGTGSIVV 303
           R  SNH  HR  + HS+ R YFS     P +  I++
Sbjct: 103 RVESNHFLHRLQETHSIARAYFSPEYTAPTSDRILL 138


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,252,376
Number of Sequences: 59808
Number of extensions: 428716
Number of successful extensions: 1126
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1038
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1119
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)