Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40161
         (650 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          23   1.9  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   1.9  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   3.4  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   4.5  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   4.5  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   5.9  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    21   7.8  
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    21   7.8  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   7.8  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    21   7.8  

>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
 Frame = -1

Query: 86  YVMQHLY--FSFSHSINFPTISG 24
           +++ H Y  F  S+S+NFP I G
Sbjct: 233 FMLNHNYPPFMLSNSLNFPQIRG 255


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 10/23 (43%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
 Frame = -1

Query: 86  YVMQHLY--FSFSHSINFPTISG 24
           +++ H Y  F  S+S+NFP I G
Sbjct: 233 FMLNHNYPPFMLSNSLNFPQIRG 255


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
 Frame = +2

Query: 326 DKLNALKNNIAKGNEFDL--VDGGSKGNAHYGNEFDGD 433
           D + A     A+G   D+  V    K +A+YGN F G+
Sbjct: 403 DDVEAANGKPAEGMLTDVFHVQETDKYDAYYGNRFSGE 440


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -3

Query: 207 YRTPLLAPSRCIQSKDTSYKPIPDNSSKRSSC 112
           Y+   L    C+ +KD  Y+P P N   + +C
Sbjct: 92  YKGRALVVVSCV-TKDQPYRPHPHNLVGKEAC 122


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -3

Query: 207 YRTPLLAPSRCIQSKDTSYKPIPDNSSKRSSC 112
           Y+   L    C+ +KD  Y+P P N   + +C
Sbjct: 92  YKGRALVVVSCV-TKDQPYRPHPHNLVGKEAC 122


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -1

Query: 530  PRSRSKASPEARHQSYPNLNNLQIPVCIRSR 438
            PR + +A  EAR+Q     +  QIP  +RS+
Sbjct: 1297 PRDQ-RAMTEARNQQQQASSQQQIPESMRSK 1326


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/26 (30%), Positives = 12/26 (46%)
 Frame = -1

Query: 443 SRNHPHRTHSRNARFPSNHHRQDQIH 366
           + NH    HS  +   +N+   DQ H
Sbjct: 426 NHNHNQARHSSKSDNQNNNQHNDQAH 451


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +3

Query: 165 WTEYTWMGQVEVYGN 209
           WT Y  +  + VYGN
Sbjct: 295 WTPYATVALIGVYGN 309


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = +3

Query: 615 REFPRSYRSKS 647
           R+FPRS+R KS
Sbjct: 66  RDFPRSHRFKS 76


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +3

Query: 165 WTEYTWMGQVEVYGN 209
           WT Y  +  + VYGN
Sbjct: 295 WTPYATVALIGVYGN 309


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,057
Number of Sequences: 438
Number of extensions: 3888
Number of successful extensions: 16
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19682733
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)