Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40161
         (650 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g22650.1 68418.m02646 expressed protein non-consensus AT dono...    29   2.7  
At2g25050.1 68415.m02996 formin homology 2 domain-containing pro...    28   4.7  

>At5g22650.1 68418.m02646 expressed protein non-consensus AT donor
           splice site at exon 3, AC acceptor splice site at exon
           4;
          Length = 306

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +2

Query: 317 LSQDKLNALKNNIAKGNEFDLVDGGSKGNAHY 412
           LSQDK   +  ++    EF+L   G+K N H+
Sbjct: 57  LSQDKFPQISFDLVFDKEFELSHSGTKANVHF 88


>At2g25050.1 68415.m02996 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02128
          Length = 1111

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 19/48 (39%), Positives = 23/48 (47%)
 Frame = -3

Query: 498 ASSELSESE*FTDSCLHPITQSSPSNSFP*CAFPFEPPSTRSNSFPFA 355
           +SS  S S  F  + LHP+T S P  + P C  P  P    SN  P A
Sbjct: 506 SSSPASPSISFLPT-LHPLTSSQPKKASPQC--PQSPTPVHSNGPPSA 550


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,991,820
Number of Sequences: 28952
Number of extensions: 292615
Number of successful extensions: 798
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 771
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1354097952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)