Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40160
(665 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC530.10c |anc1||adenine nucleotide carrier Anc1|Schizosacchar... 103 2e-23
SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces ... 58 1e-09
SPAC17H9.08 |||mitochondrial coenzyme A transporter|Schizosaccha... 48 1e-06
SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter |Schiz... 38 0.002
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil... 37 0.002
SPAC19G12.05 |||mitochondrial citrate transporter|Schizosaccharo... 31 0.20
SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomy... 30 0.34
SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyce... 29 0.60
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 27 1.8
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 26 4.2
SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces pomb... 26 5.6
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc... 26 5.6
SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|ch... 25 7.4
SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyc... 25 7.4
SPAC4G9.20c |||mitochondrial carrier with solute carrier repeats... 25 9.8
>SPBC530.10c |anc1||adenine nucleotide carrier
Anc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 322
Score = 103 bits (247), Expect = 2e-23
Identities = 50/80 (62%), Positives = 61/80 (76%), Gaps = 1/80 (1%)
Frame = +1
Query: 256 VSKTAVAPIERVKLLLQVQ-HVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVI 432
VSKTA APIERVKLL+Q Q + + RYKGI + F R E+G++S WRGN ANV+
Sbjct: 40 VSKTAAAPIERVKLLIQNQDEMIRAGRLSHRYKGIGECFKRTAAEEGVISLWRGNTANVL 99
Query: 433 RYFPTQALNFAFKDKYKQVF 492
RYFPTQALNFAFKDK+K++F
Sbjct: 100 RYFPTQALNFAFKDKFKKMF 119
Score = 39.5 bits (88), Expect = 4e-04
Identities = 20/33 (60%), Positives = 24/33 (72%), Gaps = 2/33 (6%)
Frame = +3
Query: 573 SLCFVYPLDFARTRLAADV--GKGDGQREFSGL 665
SL FVY LD+ARTRLA D K G+R+F+GL
Sbjct: 146 SLLFVYSLDYARTRLANDAKSAKKGGERQFNGL 178
Score = 30.3 bits (65), Expect = 0.26
Identities = 16/61 (26%), Positives = 29/61 (47%)
Frame = +1
Query: 319 SKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLG 498
S + ++++ G+VD + + + GL +RG +V+ + L F D K V L
Sbjct: 166 SAKKGGERQFNGLVDVYRKTYRSDGLRGLYRGFGPSVVGIVVYRGLYFGMYDTLKPVVLV 225
Query: 499 G 501
G
Sbjct: 226 G 226
>SPAPB17E12.12c |||mitochondrial transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 317
Score = 58.0 bits (134), Expect = 1e-09
Identities = 30/77 (38%), Positives = 47/77 (61%)
Frame = +1
Query: 256 VSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 435
VS+TAV+P+ER+K++ QVQ+ ++ Y + V+I +GL+ F+RGN N +R
Sbjct: 33 VSRTAVSPLERMKIIFQVQN-------NKEYTSLTSTLVKIWNREGLIGFFRGNGTNCLR 85
Query: 436 YFPTQALNFAFKDKYKQ 486
FP A+ FA + KQ
Sbjct: 86 AFPYGAVQFATFNMLKQ 102
Score = 31.9 bits (69), Expect = 0.085
Identities = 16/69 (23%), Positives = 32/69 (46%)
Frame = +1
Query: 256 VSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 435
+ +T P + ++ QV + YK I A I K +G+ F+RG +N+++
Sbjct: 239 IGQTLTFPADVLRRRFQVNRIP---GIGHNYKNIKSAIFHIYKTEGINGFFRGYSSNMLK 295
Query: 436 YFPTQALNF 462
P ++ +
Sbjct: 296 IIPVMSITW 304
>SPAC17H9.08 |||mitochondrial coenzyme A
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 326
Score = 48.0 bits (109), Expect = 1e-06
Identities = 26/80 (32%), Positives = 44/80 (55%)
Frame = +1
Query: 256 VSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 435
V+K+ VAP++RVK+L Q H S + A R+ G+ A I GL ++G+ A + R
Sbjct: 30 VAKSVVAPLDRVKILYQTNHASYRGYAYSRH-GLYKAIKHIYHVYGLHGLYQGHTATLYR 88
Query: 436 YFPTQALNFAFKDKYKQVFL 495
FP + F ++ ++V +
Sbjct: 89 VFPYAGIKFVAYEQVRRVLI 108
>SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 298
Score = 37.5 bits (83), Expect = 0.002
Identities = 28/94 (29%), Positives = 43/94 (45%), Gaps = 3/94 (3%)
Frame = +1
Query: 268 AVAPIERVKLL--LQVQHVSKQIAADQR-YKGIVDAFVRIPKEQGLLSFWRGNFANVIRY 438
AVA I V L L V Q++ + Y G D +I K +G +RG ++
Sbjct: 16 AVAGISEVLTLYPLDVVKTRMQLSVGKSDYNGTFDCLKKIVKNEGPHRLYRGILPPILME 75
Query: 439 FPTQALNFAFKDKYKQVFLGGVDRRRSSGVTSLV 540
P +AL FA D Y +++ R+ SS S++
Sbjct: 76 APKRALKFASNDTYSKLWRKVFKRKDSSPALSIL 109
Score = 31.5 bits (68), Expect = 0.11
Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Frame = +1
Query: 271 VAPIERVKLLLQ-VQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPT 447
V P E +K+ LQ V++ SK Y G VD F +I K++ +L+ + G A + R+
Sbjct: 122 VVPFELMKIRLQDVKNASK-------YNGTVDCFTKIVKQERILALYNGFEATMWRHVVW 174
Query: 448 QALNFAFKDKYK 483
A F K +
Sbjct: 175 NAGYFGVIQKIR 186
Score = 27.5 bits (58), Expect = 1.8
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +3
Query: 585 VYPLDFARTRLAADVGKGDGQREFSGL 665
+YPLD +TR+ VGK D F L
Sbjct: 26 LYPLDVVKTRMQLSVGKSDYNGTFDCL 52
>SPBC12D12.05c |||mitochondrial carrier, calcium binding
subfamily|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 37.1 bits (82), Expect = 0.002
Identities = 19/74 (25%), Positives = 36/74 (48%)
Frame = +1
Query: 265 TAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFP 444
T V P+ ++ LQ Q S A Y G +D F + K +G ++G N+++ P
Sbjct: 351 TIVFPLNVIRTRLQTQGTSAHPAT---YDGFIDCFYKTTKNEGFRGLYKGLSPNLLKVAP 407
Query: 445 TQALNFAFKDKYKQ 486
+ A+++ + K+
Sbjct: 408 SVAISYLVYENCKK 421
Score = 27.9 bits (59), Expect = 1.4
Identities = 17/82 (20%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Frame = +1
Query: 256 VSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVR-IPKEQGLLSFWRGNFANVI 432
V++ + P++ +K +Q +S+ Q K I+ + + + K G+ ++RG ++
Sbjct: 241 VAQMFIYPVDTLKFRIQCSDLSR----GQHGKSIILSNAKELYKSVGIRGYYRGVLVGIL 296
Query: 433 RYFPTQALNFAFKDKYKQVFLG 498
FP A + + K+ ++G
Sbjct: 297 GMFPYSATDLGTFEGLKRTWIG 318
>SPAC19G12.05 |||mitochondrial citrate
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 291
Score = 30.7 bits (66), Expect = 0.20
Identities = 18/71 (25%), Positives = 32/71 (45%)
Frame = +1
Query: 277 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQAL 456
PI+ VK +Q ++A + YK + +I + GLL FW G + R + +
Sbjct: 223 PIDTVKSRMQ------SLSASKEYKNSIHCAYKILTQDGLLRFWSGATPRLARLILSGGI 276
Query: 457 NFAFKDKYKQV 489
F +K ++
Sbjct: 277 VFTVYEKVMEI 287
>SPAC688.09 |||pyrimidine nucletide transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 29.9 bits (64), Expect = 0.34
Identities = 13/48 (27%), Positives = 24/48 (50%)
Frame = +1
Query: 319 SKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNF 462
S I +Y G++ F + EQG++ + G A+++R P + F
Sbjct: 303 SPSINGTPKYTGLIQCFKLVWMEQGIVGLYGGLTAHLLRVVPNACILF 350
>SPAC227.03c |||mitochondrial NAD+ transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 371
Score = 29.1 bits (62), Expect = 0.60
Identities = 22/91 (24%), Positives = 41/91 (45%), Gaps = 3/91 (3%)
Frame = +1
Query: 259 SKTAVAPIERVKLLLQVQHVSKQIAADQRYK---GIVDAFVRIPKEQGLLSFWRGNFANV 429
S VAP++ VK Q Q + G + + I +G+ +RG +
Sbjct: 19 SSLVVAPLDVVKTRKQAQKAFYSTGGGKNTMVLGGTLSSMRTIFHNEGIAGLYRGVGPMM 78
Query: 430 IRYFPTQALNFAFKDKYKQVFLGGVDRRRSS 522
+ Y P+ ++ F +K K +F GV+++ +S
Sbjct: 79 LGYLPSWSIYFVVYEKCKVLF--GVNKKYTS 107
Score = 28.7 bits (61), Expect = 0.80
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +1
Query: 331 AADQRYKGIVDAFVRIPKEQGLLSFWRGNFANV 429
A Y DAF +I K +GL +F+RG F ++
Sbjct: 225 ACSPAYNNTFDAFRKIYKYEGLAAFYRGLFPSL 257
>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 604
Score = 27.5 bits (58), Expect = 1.8
Identities = 17/41 (41%), Positives = 18/41 (43%)
Frame = -3
Query: 651 HAGHLPYRHRRRDGYVRSRGGTRSTERWLRRHHRRPDYQRS 529
H P R R RD RS +RS R HR DY RS
Sbjct: 140 HQSRSPVRSRDRD---RSSRSSRSRHPSSRSRHRYDDYSRS 177
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 26.2 bits (55), Expect = 4.2
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +1
Query: 67 YEITPNLLFKNQELVFRDPPSACAATPTSTY 159
YE+ N F N PP AC+ TS Y
Sbjct: 362 YEMKQNDAFNNNNPATATPPPACSLLETSWY 392
>SPBC19F5.02c |||U3 snoRNP protein Utp4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 710
Score = 25.8 bits (54), Expect = 5.6
Identities = 19/75 (25%), Positives = 28/75 (37%), Gaps = 4/75 (5%)
Frame = +1
Query: 301 LQVQHVSK-QIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFP---TQALNFAF 468
+QV K + A K + D + G + FW G F + + F AL
Sbjct: 195 MQVDRARKGEAALIWAVKSLRDGTIVSADSSGAVKFWNGKFFTLSQSFKLHLADALCLGV 254
Query: 469 KDKYKQVFLGGVDRR 513
VF G+DR+
Sbjct: 255 SANGDMVFSSGIDRK 269
>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 25.8 bits (54), Expect = 5.6
Identities = 13/36 (36%), Positives = 20/36 (55%)
Frame = -1
Query: 371 TKASTIPL*RWSAAICLLTCCTWSSSLTRSIGATAV 264
T+ + + + WSA I +LT C SLT S+ T +
Sbjct: 533 TEENVVYVGLWSADIIMLTYCQDGISLTHSLKLTDI 568
>SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|chr
1|||Manual
Length = 271
Score = 25.4 bits (53), Expect = 7.4
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = +1
Query: 355 IVDAFVRIPKEQGLLSFWRGNFANVIRYFPT 447
+++ + + +GL F+RG + V Y PT
Sbjct: 119 VINTISTLARSEGLKGFYRGYWMGVAIYLPT 149
>SPAC11D3.08c |||amino acid permease, unknown 1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 550
Score = 25.4 bits (53), Expect = 7.4
Identities = 12/26 (46%), Positives = 18/26 (69%)
Frame = +1
Query: 226 GLPGWRYLRRVSKTAVAPIERVKLLL 303
G+PG RYLR ++K V P+ + L+L
Sbjct: 370 GIPGSRYLRLLTKQKV-PLNAILLVL 394
>SPAC4G9.20c |||mitochondrial carrier with solute carrier
repeats|Schizosaccharomyces pombe|chr 1|||Manual
Length = 302
Score = 25.0 bits (52), Expect = 9.8
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +1
Query: 271 VAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRG 414
V P+E V++ LQ+Q K + Y G D +I + GL +G
Sbjct: 130 VGPVEHVRIRLQIQ-TGKNVL----YHGPWDCIKKISSQYGLSGIMKG 172
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,582,623
Number of Sequences: 5004
Number of extensions: 51772
Number of successful extensions: 182
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 180
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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