Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40160
         (665 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   161   7e-42
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   161   7e-42
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   8.0  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  161 bits (390), Expect = 7e-42
 Identities = 72/85 (84%), Positives = 80/85 (94%)
 Frame = +1

Query: 256 VSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 435
           +SKT VAPIERVKLLLQVQH+SKQI+ +QRYKG++D FVRIPKEQG LS+WRGN ANVIR
Sbjct: 23  ISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWRGNLANVIR 82

Query: 436 YFPTQALNFAFKDKYKQVFLGGVDR 510
           YFPTQALNFAFKDKYKQVFLGGVD+
Sbjct: 83  YFPTQALNFAFKDKYKQVFLGGVDK 107



 Score = 72.1 bits (169), Expect = 4e-15
 Identities = 34/53 (64%), Positives = 37/53 (69%)
 Frame = +3

Query: 507 QKTQFWRYFXXXXXXXXXXXXTSLCFVYPLDFARTRLAADVGKGDGQREFSGL 665
           + TQF RYF            TSLCFVYPLDFARTRLAADVGK  G+REF+GL
Sbjct: 107 KNTQFLRYFVGNLASGGAAGATSLCFVYPLDFARTRLAADVGKAGGEREFTGL 159



 Score = 43.2 bits (97), Expect = 2e-06
 Identities = 19/22 (86%), Positives = 21/22 (95%)
 Frame = +2

Query: 191 MSNLADPVAFAKDFLAGGISAA 256
           MS LADPVAFAKDFLAGG++AA
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAA 22



 Score = 27.5 bits (58), Expect = 0.12
 Identities = 14/53 (26%), Positives = 30/53 (56%)
 Frame = +1

Query: 277 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 435
           P + V+  + +Q  S +  ++  YK  +  +  I K +G  +F++G F+N++R
Sbjct: 232 PFDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILR 282



 Score = 21.4 bits (43), Expect = 8.0
 Identities = 11/46 (23%), Positives = 21/46 (45%)
 Frame = +1

Query: 337 DQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKD 474
           ++ + G+ +   +I K  G+   +RG   +V      +A  F F D
Sbjct: 153 EREFTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYD 198


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  161 bits (390), Expect = 7e-42
 Identities = 72/85 (84%), Positives = 80/85 (94%)
 Frame = +1

Query: 256 VSKTAVAPIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 435
           +SKT VAPIERVKLLLQVQH+SKQI+ +QRYKG++D FVRIPKEQG LS+WRGN ANVIR
Sbjct: 23  ISKTTVAPIERVKLLLQVQHISKQISEEQRYKGMIDCFVRIPKEQGFLSYWRGNLANVIR 82

Query: 436 YFPTQALNFAFKDKYKQVFLGGVDR 510
           YFPTQALNFAFKDKYKQVFLGGVD+
Sbjct: 83  YFPTQALNFAFKDKYKQVFLGGVDK 107



 Score = 72.1 bits (169), Expect = 4e-15
 Identities = 34/53 (64%), Positives = 37/53 (69%)
 Frame = +3

Query: 507 QKTQFWRYFXXXXXXXXXXXXTSLCFVYPLDFARTRLAADVGKGDGQREFSGL 665
           + TQF RYF            TSLCFVYPLDFARTRLAADVGK  G+REF+GL
Sbjct: 107 KNTQFLRYFVGNLASGGAAGATSLCFVYPLDFARTRLAADVGKAGGEREFTGL 159



 Score = 43.2 bits (97), Expect = 2e-06
 Identities = 19/22 (86%), Positives = 21/22 (95%)
 Frame = +2

Query: 191 MSNLADPVAFAKDFLAGGISAA 256
           MS LADPVAFAKDFLAGG++AA
Sbjct: 1   MSGLADPVAFAKDFLAGGVAAA 22



 Score = 27.5 bits (58), Expect = 0.12
 Identities = 14/53 (26%), Positives = 30/53 (56%)
 Frame = +1

Query: 277 PIERVKLLLQVQHVSKQIAADQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIR 435
           P + V+  + +Q  S +  ++  YK  +  +  I K +G  +F++G F+N++R
Sbjct: 232 PFDTVRRRMMMQ--SGRAKSEILYKSTLHCWATIYKTEGGNAFFKGAFSNILR 282



 Score = 21.4 bits (43), Expect = 8.0
 Identities = 11/46 (23%), Positives = 21/46 (45%)
 Frame = +1

Query: 337 DQRYKGIVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKD 474
           ++ + G+ +   +I K  G+   +RG   +V      +A  F F D
Sbjct: 153 EREFTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYD 198


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 21.4 bits (43), Expect = 8.0
 Identities = 10/41 (24%), Positives = 20/41 (48%)
 Frame = +3

Query: 252  PRLQDRRSTNRACQAAAPSTARQQADRRRPALQGYRRRLRP 374
            PR +D++ ++   +  +  TA   A   RP     + +L+P
Sbjct: 1088 PRKRDQKQSDDKTKETSTVTAAAAATNIRPGTADNKPQLKP 1128


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 182,987
Number of Sequences: 438
Number of extensions: 3978
Number of successful extensions: 15
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20099475
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)