Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40159
(621 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom... 118 9e-28
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha... 42 1e-04
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom... 40 3e-04
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom... 36 0.006
SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces ... 35 0.008
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac... 34 0.014
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c... 34 0.014
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5... 33 0.033
SPCC1672.07 |||U3 snoRNP-associated protein Utp21 |Schizosacchar... 33 0.044
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 32 0.058
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13... 31 0.13
SPAC806.02c |||Par A family ATPase iron cluster assembly protein... 30 0.23
SPAC23C4.15 |rpb5||DNA-directed RNA polymerase I, II and III sub... 29 0.41
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 29 0.54
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch... 29 0.72
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 29 0.72
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar... 28 0.95
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb... 28 0.95
SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein Mfr1|Schizosa... 28 1.3
SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po... 27 1.7
SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit S... 27 1.7
SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces p... 27 1.7
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 27 1.7
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac... 27 2.9
SPAC323.07c |||MatE family transporter|Schizosaccharomyces pombe... 27 2.9
SPAC824.04 |||WD repeat protein|Schizosaccharomyces pombe|chr 1|... 26 3.8
SPAC13G7.04c |mac1||membrane anchored protein Mac1 |Schizosaccha... 26 3.8
SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |... 26 3.8
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom... 26 5.1
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb... 25 6.7
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro... 25 6.7
SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces ... 25 6.7
SPCC191.08 |||DUF1715 family protein|Schizosaccharomyces pombe|c... 25 8.8
SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1 |Schi... 25 8.8
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 25 8.8
>SPBC1A4.07c |||U3 snoRNP-associated protein
Sof1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 436
Score = 118 bits (283), Expect = 9e-28
Identities = 50/79 (63%), Positives = 67/79 (84%)
Frame = +2
Query: 17 NEDYNLYTFDVRRLKEPVAIHMDHTSAVIDVDYAPTGREFVAGSYDKTIRIFQNDKGHSR 196
+ED+NLY +D+R LK + ++ DH SAV+ VD++PTG+EFV+GSYDKTIRI+ +GHSR
Sbjct: 249 SEDHNLYMYDMRNLKRALHVYKDHVSAVMSVDFSPTGQEFVSGSYDKTIRIYNVREGHSR 308
Query: 197 DVYHTKRMQRLTCVKWSLD 253
DVYHTKRMQR+T VK+S+D
Sbjct: 309 DVYHTKRMQRVTAVKFSMD 327
Score = 81.8 bits (193), Expect = 7e-17
Identities = 35/91 (38%), Positives = 57/91 (62%)
Frame = +1
Query: 256 KYVMSGSDEMNIRMWKARASEKLGVLKPRERQALNYAEALKEKFATHPQVKRIARHRHVP 435
+Y+ SGSD+ N+R+W+ARAS + + RE L Y ++L+E++ P+++RIARHRH+P
Sbjct: 329 QYIFSGSDDSNVRLWRARASSRASIRSTREENRLKYLDSLRERYKHIPEIRRIARHRHLP 388
Query: 436 KHILNAQKELRTIREKTKRKEANRPPTVKRG 528
++ A + R KR+E N K+G
Sbjct: 389 TNVKKAAEIKREEINSLKRREENIRRHSKKG 419
Score = 30.3 bits (65), Expect = 0.23
Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 2/30 (6%)
Frame = +3
Query: 483 NEEKRSKQTA--HSKKGTIPIVSEKKRHVV 566
N KR ++ HSKKG +P E++RHVV
Sbjct: 403 NSLKRREENIRRHSKKGAVPYEKERERHVV 432
>SPAC4F8.11 |||WD repeat protein, human WDR24
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 846
Score = 41.5 bits (93), Expect = 1e-04
Identities = 21/71 (29%), Positives = 33/71 (46%)
Frame = +2
Query: 32 LYTFDVRRLKEPVAIHMDHTSAVIDVDYAPTGREFVAGSYDKTIRIFQNDKGHSRDVYHT 211
L +D+R K P H V+ V+Y+P G + DKTIRI+ + + +
Sbjct: 202 LQKWDIRFPKLPFLKLAAHNGVVLCVNYSPNGVFLASCGRDKTIRIWDSTSNKKKSLITI 261
Query: 212 KRMQRLTCVKW 244
+ L CV+W
Sbjct: 262 NNVSPLNCVRW 272
>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 558
Score = 39.9 bits (89), Expect = 3e-04
Identities = 16/56 (28%), Positives = 34/56 (60%)
Frame = +2
Query: 86 HTSAVIDVDYAPTGREFVAGSYDKTIRIFQNDKGHSRDVYHTKRMQRLTCVKWSLD 253
H + D+ ++ GR F++ S+DKTI+++ + G + +++ R+ CVK+ +D
Sbjct: 309 HARPIRDLSFSQDGRSFLSTSFDKTIKLWDTELGKCLNCFNSDRL--TNCVKFQVD 362
>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 35.5 bits (78), Expect = 0.006
Identities = 19/61 (31%), Positives = 33/61 (54%)
Frame = +2
Query: 5 LQLANEDYNLYTFDVRRLKEPVAIHMDHTSAVIDVDYAPTGREFVAGSYDKTIRIFQNDK 184
L A++D + +D + + V HT+ V +D+ P G V+GS+D+T+RI+
Sbjct: 111 LASASDDKTIRIWDFEK-RCSVRCLKGHTNYVSSIDFNPLGTLLVSGSWDETVRIWNLQD 169
Query: 185 G 187
G
Sbjct: 170 G 170
>SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 314
Score = 35.1 bits (77), Expect = 0.008
Identities = 15/29 (51%), Positives = 21/29 (72%)
Frame = +2
Query: 86 HTSAVIDVDYAPTGREFVAGSYDKTIRIF 172
HTS V+ V +P R+ V+GS DKTI+I+
Sbjct: 104 HTSDVLSVSISPDNRQVVSGSRDKTIKIW 132
>SPAC630.14c |tup12||transcriptional corepressor Tup12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 586
Score = 34.3 bits (75), Expect = 0.014
Identities = 15/64 (23%), Positives = 33/64 (51%)
Frame = +2
Query: 20 EDYNLYTFDVRRLKEPVAIHMDHTSAVIDVDYAPTGREFVAGSYDKTIRIFQNDKGHSRD 199
ED + +D+ + K + H + +D++ G+ V+GS D+T+ ++ + G +
Sbjct: 354 EDQQIRIWDIAQ-KRVYRLLTGHEQEIYSLDFSKDGKTLVSGSGDRTVCLWDVEAGEQKL 412
Query: 200 VYHT 211
+ HT
Sbjct: 413 ILHT 416
Score = 32.3 bits (70), Expect = 0.058
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +2
Query: 86 HTSAVIDVDYAPTGREFVAGSYDKTIRIFQNDKGHSR 196
H ++ V +P G+ ++GS D+TI+ + D HS+
Sbjct: 511 HKDFILSVTVSPDGKWIISGSKDRTIQFWSPDSPHSQ 547
Score = 31.5 bits (68), Expect = 0.10
Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 7/68 (10%)
Frame = +2
Query: 23 DYNLYTFDVRRLKEPVAIHMDHTSAVIDVDYAPTGREFVAGSYDKTIRIFQND------- 181
D + +DV ++ + +H D V V ++P G+ AGS DK IRI+ +
Sbjct: 397 DRTVCLWDVEAGEQKLILHTD--DGVTTVMFSPDGQFIAAGSLDKVIRIWTSSGTLVEQL 454
Query: 182 KGHSRDVY 205
GH VY
Sbjct: 455 HGHEESVY 462
>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 502
Score = 34.3 bits (75), Expect = 0.014
Identities = 14/58 (24%), Positives = 28/58 (48%)
Frame = +2
Query: 14 ANEDYNLYTFDVRRLKEPVAIHMDHTSAVIDVDYAPTGREFVAGSYDKTIRIFQNDKG 187
A++D L +D ++ +P+ H V ++P GR S+D ++R++ G
Sbjct: 364 ASDDLQLILWDPQKSTKPITKMHGHQKVVNHASFSPDGRCIATASFDSSVRLWDGKTG 421
Score = 33.5 bits (73), Expect = 0.025
Identities = 17/55 (30%), Positives = 29/55 (52%)
Frame = +2
Query: 14 ANEDYNLYTFDVRRLKEPVAIHMDHTSAVIDVDYAPTGREFVAGSYDKTIRIFQN 178
+++D L +DVR K + H V VD++P G+ +G DK +RI+ +
Sbjct: 449 SSQDTTLKVWDVRSKKMKFDLP-GHEDQVFAVDWSPDGQRVASGGADKAVRIWSH 502
Score = 31.1 bits (67), Expect = 0.13
Identities = 16/41 (39%), Positives = 20/41 (48%)
Frame = +2
Query: 65 PVAIHMDHTSAVIDVDYAPTGREFVAGSYDKTIRIFQNDKG 187
P+A HT+ V V +AP GS D TIR + KG
Sbjct: 169 PIATMKGHTNWVSCVAWAPDASIIATGSMDNTIRFWDPKKG 209
>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
Taf72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 643
Score = 33.1 bits (72), Expect = 0.033
Identities = 16/48 (33%), Positives = 25/48 (52%)
Frame = +2
Query: 65 PVAIHMDHTSAVIDVDYAPTGREFVAGSYDKTIRIFQNDKGHSRDVYH 208
P+ + H S V V + P + GS DKT R++ +GHS V++
Sbjct: 455 PLRVFAGHLSDVDCVTFHPNSAYVLTGSSDKTCRLWDVHRGHSVRVFN 502
Score = 30.7 bits (66), Expect = 0.18
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = +2
Query: 59 KEPVAIHMDHTSAVIDVDYAPTGREFVAGSYDKTIRIFQND 181
K + + HT V DV + P G F S+D+T +++ D
Sbjct: 411 KTALVAYKGHTGPVWDVAFGPFGHYFATASHDQTAQLWSCD 451
>SPCC1672.07 |||U3 snoRNP-associated protein Utp21
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 902
Score = 32.7 bits (71), Expect = 0.044
Identities = 21/67 (31%), Positives = 32/67 (47%)
Frame = +2
Query: 11 LANEDYNLYTFDVRRLKEPVAIHMDHTSAVIDVDYAPTGREFVAGSYDKTIRIFQNDKGH 190
+A +D+ + DV+ K V H++ + D++ TGR V S D TIR + GH
Sbjct: 547 VACDDFGIRIVDVQTRKI-VRELWGHSNRLTSFDFSDTGRWLVTASLDGTIRTWDLPTGH 605
Query: 191 SRDVYHT 211
D T
Sbjct: 606 LIDSIST 612
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 32.3 bits (70), Expect = 0.058
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +2
Query: 86 HTSAVIDVDYAPTGREFVAGSYDKTIRIFQND 181
H ++VI V ++P GR+F +GS D RI+ D
Sbjct: 579 HKNSVISVCFSPDGRQFASGSGDLRARIWSID 610
>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 777
Score = 31.1 bits (67), Expect = 0.13
Identities = 12/39 (30%), Positives = 24/39 (61%)
Frame = +2
Query: 68 VAIHMDHTSAVIDVDYAPTGREFVAGSYDKTIRIFQNDK 184
+A+ H+S + + + PTG ++GS DKT++++ K
Sbjct: 182 MAVFEGHSSVIRGLTFEPTGSFLLSGSRDKTVQVWNIKK 220
Score = 28.7 bits (61), Expect = 0.72
Identities = 17/56 (30%), Positives = 27/56 (48%)
Frame = +2
Query: 14 ANEDYNLYTFDVRRLKEPVAIHMDHTSAVIDVDYAPTGREFVAGSYDKTIRIFQND 181
A++D + +D E V + H V + P R+ +GS D+TIRI+ D
Sbjct: 483 ASQDKTIKLWD-SSTGEVVGVLRGHRRGVWACSFNPFSRQLASGSGDRTIRIWNVD 537
Score = 25.8 bits (54), Expect = 5.1
Identities = 10/41 (24%), Positives = 21/41 (51%)
Frame = +1
Query: 226 INLREMVSRYKYVMSGSDEMNIRMWKARASEKLGVLKPRER 348
+N ++ + + S S + I++W + E +GVL+ R
Sbjct: 468 VNAIQVSKDGRIIASASQDKTIKLWDSSTGEVVGVLRGHRR 508
>SPAC806.02c |||Par A family ATPase iron cluster assembly
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 608
Score = 30.3 bits (65), Expect = 0.23
Identities = 20/61 (32%), Positives = 32/61 (52%)
Frame = +2
Query: 68 VAIHMDHTSAVIDVDYAPTGREFVAGSYDKTIRIFQNDKGHSRDVYHTKRMQRLTCVKWS 247
+A+ +HT V V + PT V+GSYD +I +++D D T ++Q T W+
Sbjct: 416 LAVLQEHTQDVKVVTWHPTEDLLVSGSYDNSICFWRDD---GDDWALTCQLQGHTNTVWA 472
Query: 248 L 250
L
Sbjct: 473 L 473
Score = 26.2 bits (55), Expect = 3.8
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Frame = +2
Query: 86 HTSAVIDVDYAPTGREFVAGSYDKTIRIFQNDK---GHSRDVYHTKRMQRL 229
HT + V P F S DK++RI+ ++ H D +HT+ ++R+
Sbjct: 289 HTGRLWSVAAHPMLPLFATSSQDKSVRIYNSNTYNLVHVIDGFHTRSIRRV 339
>SPAC23C4.15 |rpb5||DNA-directed RNA polymerase I, II and III
subunit Rpb5 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 210
Score = 29.5 bits (63), Expect = 0.41
Identities = 14/44 (31%), Positives = 21/44 (47%)
Frame = +1
Query: 379 EKFATHPQVKRIARHRHVPKHILNAQKELRTIREKTKRKEANRP 510
E F + I H VPKHIL + E + + ++ K +E P
Sbjct: 128 ETFQESDLIVNITHHELVPKHILLSPDEKKELLDRYKLRETQLP 171
>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 29.1 bits (62), Expect = 0.54
Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 2/67 (2%)
Frame = +2
Query: 59 KEPVAIHMDHTSAVIDVDYAPTGREFVAGSYDKTIRIFQ--NDKGHSRDVYHTKRMQRLT 232
KE H DH+ V + Y+ GR + S DKT IF N K R + H + +
Sbjct: 204 KEYHVFH-DHSDEVWQISYSHNGRYLASASKDKTAIIFDVVNLKRVFRLIGH---IDTVA 259
Query: 233 CVKWSLD 253
++WS D
Sbjct: 260 YIRWSPD 266
Score = 25.0 bits (52), Expect = 8.8
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +1
Query: 259 YVMSGSDEMNIRMWKARASEKLGVLKPRERQALNY 363
+V+SGS++ IR+W + + L L + +NY
Sbjct: 442 FVLSGSEDDKIRIWHRESGKLLATLSGHVK-CVNY 475
>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1208
Score = 28.7 bits (61), Expect = 0.72
Identities = 25/111 (22%), Positives = 43/111 (38%), Gaps = 1/111 (0%)
Frame = +1
Query: 208 YKKNAAINLREMVSRYKYVMSGSDEMNIRMWKARASEKLGVLKPRERQALNYAEALKEKF 387
Y+ N + E+ R K + + N K V + EAL+ K
Sbjct: 989 YQNNLVQDKNELEERLKEIQKELEVYNNHFMKQAELMTSNVTDESQLMLKTLREALQSKT 1048
Query: 388 ATHPQVKRIA-RHRHVPKHILNAQKELRTIREKTKRKEANRPPTVKRGQYQ 537
+ I R+R K +L+ +LR + K ++N P + + GQY+
Sbjct: 1049 NNIDHLSTILERNRKEYKSLLDDYNQLRA---RYKNLQSNTPQSTQSGQYE 1096
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 28.7 bits (61), Expect = 0.72
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +2
Query: 131 EFVAGSYDKTIRIFQNDKGHSRDVYHTKRMQRL 229
+ V+G YD T+RI+ + G V H R R+
Sbjct: 441 KIVSGGYDGTVRIWNFNTGEQHCVLHNSRNSRV 473
Score = 27.9 bits (59), Expect = 1.3
Identities = 20/58 (34%), Positives = 27/58 (46%)
Frame = +2
Query: 14 ANEDYNLYTFDVRRLKEPVAIHMDHTSAVIDVDYAPTGREFVAGSYDKTIRIFQNDKG 187
A+ D L T+D+ IH H + Y G+ V+GS D TIRIF+ G
Sbjct: 365 ASSDRTLRTWDITTGHCIRIIHA-HQRGIACAQY--NGKFIVSGSSDLTIRIFEASSG 419
Score = 26.2 bits (55), Expect = 3.8
Identities = 13/54 (24%), Positives = 25/54 (46%)
Frame = +2
Query: 86 HTSAVIDVDYAPTGREFVAGSYDKTIRIFQNDKGHSRDVYHTKRMQRLTCVKWS 247
H ++V V Y+ V S D+T+R + GH + H + + C +++
Sbjct: 346 HLASVNSVQYSSKTGLIVTASSDRTLRTWDITTGHCIRIIHA-HQRGIACAQYN 398
>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
Pop2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 703
Score = 28.3 bits (60), Expect = 0.95
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 11/76 (14%)
Frame = +2
Query: 59 KEPVAIH--MDHTSAVIDVDYAPTGREFVAGSYDKTIRIFQ--------NDKGHSRDVYH 208
K P +H + HT +V + + G V+GSYD +IRI++ + +GHS +Y
Sbjct: 495 KNPYFVHTLIGHTDSVRTI--SGYGDILVSGSYDSSIRIWRVSTGECLYHLRGHSLRIYS 552
Query: 209 T-KRMQRLTCVKWSLD 253
+R C+ S+D
Sbjct: 553 VLYEPERNICISGSMD 568
Score = 25.4 bits (53), Expect = 6.7
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +2
Query: 86 HTSAVIDVDYAPTGREFVAGSYDKTIRIFQNDKG 187
H+ + V Y P ++GS DK+IR++ G
Sbjct: 546 HSLRIYSVLYEPERNICISGSMDKSIRVWDLSTG 579
Score = 25.0 bits (52), Expect = 8.8
Identities = 9/28 (32%), Positives = 15/28 (53%)
Frame = -3
Query: 151 ITTRDKFTASWRIVNINHGRCMIHVNGH 68
I + +S RI ++ G C+ H+ GH
Sbjct: 519 ILVSGSYDSSIRIWRVSTGECLYHLRGH 546
>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 736
Score = 28.3 bits (60), Expect = 0.95
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = +2
Query: 11 LANEDYNLYTFDVRRLKEPVAIHMDHTSAVIDVDYAPTGREFVAGSYDKTIRIF 172
+ + D L FD+ +P H+ A+ DV Y P+ F +GS D +++F
Sbjct: 627 IGSYDKRLCWFDLDFSSKPYKNLRYHSRALRDVSYHPSLPLFCSGSDDGDVQVF 680
>SPBC1198.12 |mfr1|SPBC660.02|fizzy-related protein
Mfr1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 421
Score = 27.9 bits (59), Expect = 1.3
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = +2
Query: 86 HTSAVIDVDYAPTGREFVAGSYDKTIRIFQ 175
HT+ V+ + +P G+ V G+ D+T+R ++
Sbjct: 378 HTNRVLYLSMSPDGQSIVTGAGDETLRFWK 407
>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 556
Score = 27.5 bits (58), Expect = 1.7
Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
Frame = +2
Query: 86 HTSAVIDVDYAPTGREFVAGSYDKTIR---IFQNDKGHS 193
HT V+ + +P G V G+ D+T+R +F + HS
Sbjct: 503 HTDRVLYLAMSPNGENIVTGAADETLRFWKLFDSKSKHS 541
>SPBC14C8.06 |arc1|sop2|ARP2/3 actin-organizing complex subunit
Sop2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 377
Score = 27.5 bits (58), Expect = 1.7
Identities = 17/57 (29%), Positives = 25/57 (43%), Gaps = 2/57 (3%)
Frame = +2
Query: 83 DHTSAVIDVDYAPTGREFVAGSYDKTIRIFQ-NDKGHSRDVYHTKRMQR-LTCVKWS 247
DH V VD+AP V S D+ +++ G + R+ R T V+WS
Sbjct: 53 DHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWS 109
>SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 352
Score = 27.5 bits (58), Expect = 1.7
Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = +2
Query: 56 LKEPVAIHMDHTSAVIDVDYAPTGREFVAGSYDKTIRIFQ-NDKGHSRDVYHTKRMQRLT 232
LK+ V + ++ D+ ++P A S+D +RI++ G S + +
Sbjct: 19 LKKDVEVAQPPEDSISDLAFSPQAEYLAASSWDSKVRIYEVQATGQSIGKALYEHQGPVL 78
Query: 233 CVKWSLD 253
V WS D
Sbjct: 79 SVNWSRD 85
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 27.5 bits (58), Expect = 1.7
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +2
Query: 86 HTSAVIDVDYAPTGREFVAGSYDKTIRIFQNDK 184
HT V V ++P G+ +GS D+ + I+ ++
Sbjct: 73 HTGTVTSVRFSPNGQYLASGSDDRVVIIWHKEE 105
Score = 25.8 bits (54), Expect = 5.1
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = +2
Query: 86 HTSAVIDVDYAPTGREFVAGSYDKTIRIFQ 175
H S V + + P G+ F S D+TI++++
Sbjct: 175 HQSHVKGITFDPAGKYFATESDDRTIKVWR 204
>SPAC23C4.02 |crn1||actin binding protein, coronin
Crn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 26.6 bits (56), Expect = 2.9
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Frame = +2
Query: 53 RLKEPVAIHMDHTSAVIDVDYAPTGREFVA-GSYDKTIRIFQ 175
+L + V + HT+AV+D D+ P + +A G D I I++
Sbjct: 69 KLPDQVNLFRGHTAAVLDTDWNPFHDQVLASGGDDSKIMIWK 110
>SPAC323.07c |||MatE family transporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 533
Score = 26.6 bits (56), Expect = 2.9
Identities = 27/98 (27%), Positives = 44/98 (44%), Gaps = 5/98 (5%)
Frame = -2
Query: 533 YCPLFTVGGLFASFLFVFS-RIVRSSFCAFSMCLGTCL*RAIRFTCGCVANFSFRASA*L 357
+ +FT+G L +L S + ++ AFS+ G T AN + + L
Sbjct: 113 FSTVFTLGHLGKEYLAASSLSTMTAAISAFSIFQGVISSLDTLATQAFGANKPYNVAIYL 172
Query: 356 RACLSRGLSTPSFSDALAF----HILIFISSDPLITYL 255
+ CL L+ AL + HILIF+ DP++ +L
Sbjct: 173 QRCLLI-LAVLHIPVALIWLNLEHILIFLHQDPMVAHL 209
>SPAC824.04 |||WD repeat protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 341
Score = 26.2 bits (55), Expect = 3.8
Identities = 9/30 (30%), Positives = 20/30 (66%)
Frame = +2
Query: 86 HTSAVIDVDYAPTGREFVAGSYDKTIRIFQ 175
HT V ++ +P +FV+ + DKT+++++
Sbjct: 107 HTDIVSSIEVSPIEDQFVSTANDKTLKLWK 136
>SPAC13G7.04c |mac1||membrane anchored protein Mac1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 756
Score = 26.2 bits (55), Expect = 3.8
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Frame = -2
Query: 617 LIYFIITF--TLTQSFVFFNDMSLFLRHNWYCPLFTVGGLFASFLFVFSRIVRS 462
+I I+ F TL F ++ LFL HN + T G + + + + + +RS
Sbjct: 117 IINIIVVFITTLLTCLAFAIELVLFLPHNTWQSYVTAGAIGSDLIAILALCLRS 170
>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 760
Score = 26.2 bits (55), Expect = 3.8
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = +2
Query: 86 HTSAVIDVDYAPTGREFVAGSYDKTIRIFQNDK 184
HT +V V + P G+ +++ D+T R+F K
Sbjct: 369 HTKSVKGVAWDPEGKFYLSAGTDQTTRLFARFK 401
Score = 25.4 bits (53), Expect = 6.7
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +2
Query: 71 AIHMDHTSAVIDVDYAPTGREFVAGSYDKTIRIFQND 181
A+ M H V+ VD+ PT ++ S D ++ +++ D
Sbjct: 262 ALLMGHEDWVMSVDWHPTKEMILSSSADSSMIVWEPD 298
>SPBC713.04c |||U3 snoRNP-associated protein
Utp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 854
Score = 25.8 bits (54), Expect = 5.1
Identities = 10/29 (34%), Positives = 17/29 (58%)
Frame = +2
Query: 86 HTSAVIDVDYAPTGREFVAGSYDKTIRIF 172
H V + + +G +GS+DKT+RI+
Sbjct: 466 HEGPVSSLSFNSSGSLLASGSWDKTVRIW 494
>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 605
Score = 25.4 bits (53), Expect = 6.7
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 262 VMSGSDEMNIRMWKARASEKLGVL 333
++SGS + IR+W R SE + +L
Sbjct: 326 LISGSMDKTIRIWNYRTSECISIL 349
>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 240
Score = 25.4 bits (53), Expect = 6.7
Identities = 25/105 (23%), Positives = 43/105 (40%)
Frame = +1
Query: 211 KKNAAINLREMVSRYKYVMSGSDEMNIRMWKARASEKLGVLKPRERQALNYAEALKEKFA 390
+K + L E + YK + +DE M K + +L L+ +Q AE K+ A
Sbjct: 61 EKERILALEEKKTNYKILQKSNDETAQAMRKMQDQARLRDLQKIRQQKAEDAEQRKKILA 120
Query: 391 THPQVKRIARHRHVPKHILNAQKELRTIREKTKRKEANRPPTVKR 525
+++R + R + N+ + T + K AN T R
Sbjct: 121 ---EIERDKKRRAAERENKNSSVK-ETAAPIKQPKNANSSSTCTR 161
>SPAC12G12.14c |pfs2||WD repeat protein Pfs2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 509
Score = 25.4 bits (53), Expect = 6.7
Identities = 14/45 (31%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Frame = +2
Query: 86 HTSAVIDVDYAPTGREFVAGSYDKTIRIFQ----NDKGHSRDVYH 208
H + + Y P G GS DKT R + +DK + D +H
Sbjct: 359 HDLGIWSMQYHPLGHLLCTGSNDKTTRFWSRSRPDDKESTMDRHH 403
>SPCC191.08 |||DUF1715 family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 134
Score = 25.0 bits (52), Expect = 8.8
Identities = 10/27 (37%), Positives = 17/27 (62%)
Frame = +1
Query: 373 LKEKFATHPQVKRIARHRHVPKHILNA 453
LKE+ + HP++K+ RH K +L +
Sbjct: 59 LKEENSQHPKIKKAHRHLEQLKSLLES 85
>SPBC30B4.01c |wsc1|SPBC3D6.14c|transmembrane receptor Wsc1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 374
Score = 25.0 bits (52), Expect = 8.8
Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 7/50 (14%)
Frame = -2
Query: 293 LIFISSDP----LITYLYLETISRRLIAAFF--LYGKHL-GSVLCHSGIF 165
++F++S P L+ ++YL IS RL+AA YG +L S L G F
Sbjct: 1 MVFLNSSPFKGRLLFFVYLLIISTRLVAADMNTQYGCYLVDSSLTEQGTF 50
>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 2493
Score = 25.0 bits (52), Expect = 8.8
Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
Frame = +1
Query: 436 KHILNAQKELRTIR-EKTKRKEANRPPTVKRGQYQLCLRKRDMSLKKTNDCVNVNVIIK 609
+ + NA E+R R EK ++ P R + + RKR+ +KTN VN I K
Sbjct: 2433 QEVRNAAIEVRRERREKRAIEQVVAPEVASRKKIRKNERKRENRKQKTNHHRMVNSIFK 2491
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,626,703
Number of Sequences: 5004
Number of extensions: 55920
Number of successful extensions: 283
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 283
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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