Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40159
(621 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g28450.1 68417.m04071 transducin family protein / WD-40 repea... 118 2e-27
At4g02730.1 68417.m00372 transducin family protein / WD-40 repea... 39 0.002
At3g15610.1 68416.m01980 transducin family protein / WD-40 repea... 39 0.003
At3g42660.1 68416.m04436 transducin family protein / WD-40 repea... 36 0.016
At1g10580.1 68414.m01192 transducin family protein / WD-40 repea... 36 0.022
At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p... 36 0.029
At5g52250.1 68418.m06485 transducin family protein / WD-40 repea... 35 0.038
At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG) co... 35 0.038
At1g49540.1 68414.m05553 transducin family protein / WD-40 repea... 35 0.050
At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless... 34 0.087
At1g15470.1 68414.m01860 transducin family protein / WD-40 repea... 33 0.15
At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta... 33 0.20
At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta... 33 0.20
At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta... 33 0.20
At4g29830.1 68417.m04246 transducin family protein / WD-40 repea... 32 0.27
At5g50230.1 68418.m06221 transducin family protein / WD-40 repea... 32 0.35
At3g49660.1 68416.m05427 transducin family protein / WD-40 repea... 32 0.35
At3g10990.1 68416.m01327 F-box family protein contains TIGRfam:T... 32 0.35
At2g46340.1 68415.m05768 phytochrome A supressor spa1 (SPA1) ide... 32 0.35
At1g52730.2 68414.m05959 transducin family protein / WD-40 repea... 32 0.35
At1g52730.1 68414.m05958 transducin family protein / WD-40 repea... 32 0.35
At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1 p... 32 0.35
At5g08390.1 68418.m00988 transducin family protein / WD-40 repea... 31 0.47
At1g29260.1 68414.m03578 peroxisomal targeting signal type 2 rec... 31 0.62
At5g23430.2 68418.m02749 transducin family protein / WD-40 repea... 31 0.81
At5g23430.1 68418.m02748 transducin family protein / WD-40 repea... 31 0.81
At3g47890.1 68416.m05222 ubiquitin carboxyl-terminal hydrolase-r... 31 0.81
At3g06880.1 68416.m00817 transducin family protein / WD-40 repea... 31 0.81
At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7 ... 31 0.81
At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7 ... 31 0.81
At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7 ... 31 0.81
At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7 ... 31 0.81
At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7 ... 31 0.81
At3g47910.1 68416.m05224 expressed protein low similarity to non... 30 1.1
At2g16405.1 68415.m01878 transducin family protein / WD-40 repea... 30 1.1
At5g54520.1 68418.m06788 WD-40 repeat family protein contains 5 ... 29 1.9
At3g44530.1 68416.m04786 transducin family protein / WD-40 repea... 29 1.9
At5g14530.1 68418.m01703 transducin family protein / WD-40 repea... 29 2.5
At2g43770.1 68415.m05441 transducin family protein / WD-40 repea... 29 2.5
At2g05720.1 68415.m00613 transducin family protein / WD-40 repea... 29 2.5
At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly iden... 29 3.3
At5g25150.1 68418.m02981 transducin family protein / WD-40 repea... 28 4.3
At5g24630.1 68418.m02909 expressed protein ; expression support... 28 4.3
At5g23730.1 68418.m02782 transducin family protein / WD-40 repea... 28 4.3
At3g01175.1 68416.m00022 expressed protein 28 4.3
At2g35050.1 68415.m04300 protein kinase family protein contains ... 28 4.3
At1g26620.1 68414.m03242 expressed protein ; expression supporte... 28 4.3
At5g51870.1 68418.m06430 MADS-box protein (AGL71) contains Pfam ... 28 5.7
At5g36770.1 68418.m04403 expressed protein hypothetical proteins... 28 5.7
At5g36680.1 68418.m04389 hypothetical protein similar to unknown... 28 5.7
At5g27570.1 68418.m03302 WD-40 repeat family protein contains 5 ... 28 5.7
At4g35140.1 68417.m04996 transducin family protein / WD-40 repea... 28 5.7
At2g03240.1 68415.m00277 EXS family protein / ERD1/XPR1/SYG1 fam... 28 5.7
At1g65590.1 68414.m07441 glycosyl hydrolase family 20 protein co... 28 5.7
At5g53500.1 68418.m06649 WD-40 repeat family protein contains Pf... 27 7.6
At5g27945.1 68418.m03364 transducin family protein / WD-40 repea... 27 7.6
At3g21060.1 68416.m02662 transducin family protein / WD-40 repea... 27 7.6
At3g14710.1 68416.m01860 F-box family protein ; similar to SKP... 27 7.6
At2g40820.1 68415.m05038 proline-rich family protein contains pr... 27 7.6
>At4g28450.1 68417.m04071 transducin family protein / WD-40 repeat
family protein SOF1 (involved in rRNA processing)
protein-yeast
Length = 442
Score = 118 bits (285), Expect = 2e-27
Identities = 50/84 (59%), Positives = 67/84 (79%)
Frame = +2
Query: 2 SLQLANEDYNLYTFDVRRLKEPVAIHMDHTSAVIDVDYAPTGREFVAGSYDKTIRIFQND 181
+L ANED + Y+FD R+L E +H DH SAV+D+D++PTGREFV GSYD+++RIF +
Sbjct: 250 NLTAANEDGSCYSFDGRKLDEAKCVHKDHVSAVMDIDFSPTGREFVTGSYDRSVRIFPYN 309
Query: 182 KGHSRDVYHTKRMQRLTCVKWSLD 253
GHSR++YHTKRMQR+ CVK+S D
Sbjct: 310 GGHSREIYHTKRMQRVFCVKYSCD 333
Score = 97.5 bits (232), Expect = 6e-21
Identities = 43/83 (51%), Positives = 61/83 (73%)
Frame = +1
Query: 259 YVMSGSDEMNIRMWKARASEKLGVLKPRERQALNYAEALKEKFATHPQVKRIARHRHVPK 438
YV+SGSD+ N+R+WKA+ASE+LGV+ PRE++ Y EA+K ++ +VKRI RHRH+PK
Sbjct: 336 YVISGSDDTNLRLWKAKASEQLGVILPREQKKHEYNEAVKNRYKHLSEVKRIVRHRHLPK 395
Query: 439 HILNAQKELRTIREKTKRKEANR 507
I A +RT+ + +RKEA R
Sbjct: 396 PIYKAMGIIRTVNDSKRRKEARR 418
Score = 30.3 bits (65), Expect = 1.1
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = +3
Query: 459 RTTNYPRENEEKRSKQTAHSKKGTIPIVSEKKRHVVKEDE 578
RT N + +E R K AHS GT+ +KR ++KE E
Sbjct: 405 RTVNDSKRRKEARRK--AHSAPGTVVTAPLRKRKIIKEVE 442
>At4g02730.1 68417.m00372 transducin family protein / WD-40 repeat
family protein similar to C. elegans putative WD-repeat
protein C14B1.4 (SP:Q17963)
Length = 333
Score = 39.1 bits (87), Expect = 0.002
Identities = 20/58 (34%), Positives = 33/58 (56%)
Frame = +2
Query: 14 ANEDYNLYTFDVRRLKEPVAIHMDHTSAVIDVDYAPTGREFVAGSYDKTIRIFQNDKG 187
A++D L +D R E + + HT+ V V++ P V+GS+D+TIRI++ G
Sbjct: 103 ASDDCTLRIWDARSPYECLKVLRGHTNFVFCVNFNPPSNLIVSGSFDETIRIWEVKTG 160
>At3g15610.1 68416.m01980 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to serine/threonine kinase receptor associated
protein GB:NP_035629 (SP:Q9Z1Z2) [Mus musculus];
UNR-interacting protein GB:NP_009109 [Homo sapiens]
Length = 341
Score = 38.7 bits (86), Expect = 0.003
Identities = 23/68 (33%), Positives = 34/68 (50%)
Frame = +2
Query: 20 EDYNLYTFDVRRLKEPVAIHMDHTSAVIDVDYAPTGREFVAGSYDKTIRIFQNDKGHSRD 199
ED + FD KE + + H V V +APTG + +GS D TIRI+Q + +
Sbjct: 248 EDMWVRLFDFHTGKE-IGCNKGHHGPVHCVRFAPTGESYASGSEDGTIRIWQTGPVNPEE 306
Query: 200 VYHTKRMQ 223
+ +K Q
Sbjct: 307 ISESKPKQ 314
>At3g42660.1 68416.m04436 transducin family protein / WD-40 repeat
family protein contains 5 WD-40 repeats (PF00400); AND-1
protein - Homo sapiens, EMBL:AJ006266
Length = 951
Score = 36.3 bits (80), Expect = 0.016
Identities = 16/58 (27%), Positives = 29/58 (50%)
Frame = +2
Query: 71 AIHMDHTSAVIDVDYAPTGREFVAGSYDKTIRIFQNDKGHSRDVYHTKRMQRLTCVKW 244
A+ DH A+ + +AP G+ DK + ++ DK +D+ K +R+ C+ W
Sbjct: 232 ALRGDHLEAICYLTWAPNGKYIATSGLDKQVLLWDVDK--KQDIDRHKFEERICCMSW 287
>At1g10580.1 68414.m01192 transducin family protein / WD-40 repeat
family protein similar to splicing factor hPRP17
(gi|3283220); contains 7 WD-40 repeats (PF00400);similar
to ESTs emb|F15435 and dbj|AUO62661
Length = 573
Score = 35.9 bits (79), Expect = 0.022
Identities = 17/69 (24%), Positives = 33/69 (47%)
Frame = +2
Query: 14 ANEDYNLYTFDVRRLKEPVAIHMDHTSAVIDVDYAPTGREFVAGSYDKTIRIFQNDKGHS 193
A D + +DV + + +M H AV D+ ++ G +F+ YDK I+ + + G
Sbjct: 301 AGMDCKVKIWDVYNSGKCMRTYMGHAKAVRDICFSNDGSKFLTAGYDKNIKYWDTETGQV 360
Query: 194 RDVYHTKRM 220
+ T ++
Sbjct: 361 ISTFSTGKI 369
>At1g11160.1 68414.m01278 WD-40 repeat family protein / katanin p80
subunit, putative similar to contains 6 WD-40 repeats
(PF00400); katanin p80 subunit (GI:3005601)
[Strongylocentrotus purpuratus]
Length = 974
Score = 35.5 bits (78), Expect = 0.029
Identities = 16/61 (26%), Positives = 31/61 (50%)
Frame = +2
Query: 5 LQLANEDYNLYTFDVRRLKEPVAIHMDHTSAVIDVDYAPTGREFVAGSYDKTIRIFQNDK 184
L + D NL +D R+ K + + HT + ++++P GR V+G D ++++
Sbjct: 64 LASGSSDTNLRVWDTRK-KGCIQTYKGHTRGISTIEFSPDGRWVVSGGLDNVVKVWDLTA 122
Query: 185 G 187
G
Sbjct: 123 G 123
>At5g52250.1 68418.m06485 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to photomorphogenesis repressor PnCOP1
(GI:11127996) [Ipomoea nil]
Length = 385
Score = 35.1 bits (77), Expect = 0.038
Identities = 22/72 (30%), Positives = 35/72 (48%)
Frame = +2
Query: 2 SLQLANEDYNLYTFDVRRLKEPVAIHMDHTSAVIDVDYAPTGREFVAGSYDKTIRIFQND 181
S+ + D N Y +D+RRL +P+ + HT V + + V GS D +++ + D
Sbjct: 227 SIAVGCADRNAYVYDIRRLVDPLIVLDGHTKTVTYARFMDS-HTIVTGSTDGSLKQWDID 285
Query: 182 KGHSRDVYHTKR 217
G R V T R
Sbjct: 286 NG--RRVVRTYR 295
>At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG)
contains seven G-protein beta WD-40 repeats; beta
transducin-like protein, Podospora anserina, gb:L28125;
contains Pfam profiles PF04503: Single-stranded DNA
binding protein, SSDP; PF00400:WD domain, G-beta repeat;
identical to cDNA LEUNIG (LEUNIG) GI:11141604
Length = 931
Score = 35.1 bits (77), Expect = 0.038
Identities = 13/38 (34%), Positives = 25/38 (65%), Gaps = 1/38 (2%)
Frame = +2
Query: 83 DHTSAVIDVDYAPTGREFVAGSYDKTIRIFQND-KGHS 193
+HT+ + D+ ++P+ S+DKT+R++ D KG+S
Sbjct: 691 EHTAMITDIRFSPSQLRLATSSFDKTVRVWDADNKGYS 728
>At1g49540.1 68414.m05553 transducin family protein / WD-40 repeat
family protein similar to signal transducer and
activator of transcription interacting protein 1
(GI:15929722) {Mus musculus}; similar to hypothetical
protein GB:AAD43147 GI:5430747 from (Arabidopsis
thaliana); contains Pfam PF00400: WD domain, G-beta
repeat (11 copies, 2 weak)
Length = 840
Score = 34.7 bits (76), Expect = 0.050
Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
Frame = +2
Query: 86 HTSAVIDVDYAPTGREFVAGSYDKTIRIF---QNDKGHSRDVYHTKRMQR 226
H +AV DV +A TG ++ S D+T R+F +ND+G+ + H + R
Sbjct: 414 HFAAVTDVTWARTGEYLLSVSQDQTTRVFSAWKNDEGNEAEDEHWHELAR 463
>At5g52820.1 68418.m06556 WD-40 repeat family protein / notchless
protein, putative similar to notchless [Xenopus laevis]
GI:3687833; contains Pfam PF00400: WD domain, G-beta
repeat (8 copies)
Length = 473
Score = 33.9 bits (74), Expect = 0.087
Identities = 18/79 (22%), Positives = 38/79 (48%)
Frame = +2
Query: 17 NEDYNLYTFDVRRLKEPVAIHMDHTSAVIDVDYAPTGREFVAGSYDKTIRIFQNDKGHSR 196
++D+ ++ ++ K+P H V V ++P G+ + S+DK++R++ G
Sbjct: 336 SDDFTMFLWEPSVSKQPKKRLTGHQQLVNHVYFSPDGKWIASASFDKSVRLWNGITGQFV 395
Query: 197 DVYHTKRMQRLTCVKWSLD 253
V+ + + V WS D
Sbjct: 396 TVFR-GHVGPVYQVSWSAD 413
Score = 31.5 bits (68), Expect = 0.47
Identities = 11/29 (37%), Positives = 20/29 (68%)
Frame = +2
Query: 86 HTSAVIDVDYAPTGREFVAGSYDKTIRIF 172
H AV+ V ++P G++ +GS D T+R++
Sbjct: 108 HAEAVLCVSFSPDGKQLASGSGDTTVRLW 136
Score = 29.5 bits (63), Expect = 1.9
Identities = 15/55 (27%), Positives = 33/55 (60%), Gaps = 2/55 (3%)
Frame = +2
Query: 17 NEDYNLYTFDVR--RLKEPVAIHMDHTSAVIDVDYAPTGREFVAGSYDKTIRIFQ 175
++D L +++R +LK+ + H D AV D++P G + V+G D+ +++++
Sbjct: 421 SKDSTLKIWEIRTKKLKQDLPGHADEVFAV---DWSPDGEKVVSGGKDRVLKLWK 472
>At1g15470.1 68414.m01860 transducin family protein / WD-40 repeat
family protein Strong similarity to gb AF096285
serine-threonine kinase receptor-associated protein from
Mus musculus and contains 5 PF|00400 WD40, G-beta repeat
domains. EST gb|F14050 comes from this gene
Length = 333
Score = 33.1 bits (72), Expect = 0.15
Identities = 18/51 (35%), Positives = 28/51 (54%)
Frame = +2
Query: 20 EDYNLYTFDVRRLKEPVAIHMDHTSAVIDVDYAPTGREFVAGSYDKTIRIF 172
ED ++ FD + +E + + H V V YAP G + +GS D T+RI+
Sbjct: 243 EDMWVHRFDFQTGEE-IGCNKGHHGPVHCVRYAPGGESYTSGSEDGTVRIW 292
>At4g34460.3 68417.m04900 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 347
Score = 32.7 bits (71), Expect = 0.20
Identities = 18/55 (32%), Positives = 22/55 (40%)
Frame = +2
Query: 41 FDVRRLKEPVAIHMDHTSAVIDVDYAPTGREFVAGSYDKTIRIFQNDKGHSRDVY 205
+D R V H V V + P G F GS D T R++ GH VY
Sbjct: 232 WDTRAASRAVRTFHGHEGDVNTVKFFPDGYRFGTGSDDGTCRLYDIRTGHQLQVY 286
>At4g34460.2 68417.m04898 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 315
Score = 32.7 bits (71), Expect = 0.20
Identities = 18/55 (32%), Positives = 22/55 (40%)
Frame = +2
Query: 41 FDVRRLKEPVAIHMDHTSAVIDVDYAPTGREFVAGSYDKTIRIFQNDKGHSRDVY 205
+D R V H V V + P G F GS D T R++ GH VY
Sbjct: 170 WDTRAASRAVRTFHGHEGDVNTVKFFPDGYRFGTGSDDGTCRLYDIRTGHQLQVY 224
>At4g34460.1 68417.m04899 guanine nucleotide-binding protein beta
subunit (GB1) / GTP-binding protein beta subunit (AGB1)
/ transducin contains 7 WD-40 repeats (PF00400);
identical to Guanine nucleotide-binding protein beta
subunit.SP:P49177 [Arabidopsis thaliana]; Weiss, CA et
al, PNAS 91:9954 (1994)
Length = 377
Score = 32.7 bits (71), Expect = 0.20
Identities = 18/55 (32%), Positives = 22/55 (40%)
Frame = +2
Query: 41 FDVRRLKEPVAIHMDHTSAVIDVDYAPTGREFVAGSYDKTIRIFQNDKGHSRDVY 205
+D R V H V V + P G F GS D T R++ GH VY
Sbjct: 232 WDTRAASRAVRTFHGHEGDVNTVKFFPDGYRFGTGSDDGTCRLYDIRTGHQLQVY 286
>At4g29830.1 68417.m04246 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400); G
protein beta subunit-like protein, Schistosoma mansoni,
gb:U30261
Length = 321
Score = 32.3 bits (70), Expect = 0.27
Identities = 13/29 (44%), Positives = 19/29 (65%)
Frame = +2
Query: 86 HTSAVIDVDYAPTGREFVAGSYDKTIRIF 172
HTS V+ VD +P G GS D+T+R++
Sbjct: 242 HTSWVLSVDASPDGGAIATGSSDRTVRLW 270
>At5g50230.1 68418.m06221 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to TIPD PROTEIN (SP:O15736)[Dictyostelium
discoideum]
Length = 515
Score = 31.9 bits (69), Expect = 0.35
Identities = 21/65 (32%), Positives = 35/65 (53%), Gaps = 2/65 (3%)
Frame = +2
Query: 2 SLQLANEDYNLYTFDVR--RLKEPVAIHMDHTSAVIDVDYAPTGREFVAGSYDKTIRIFQ 175
S+ A NL+ +DV R++ + H D AV DV + R V+ +YD+TI+++
Sbjct: 287 SVIAATSSNNLFVWDVSSGRVRHTLTGHTDKVCAV-DVSKF-SSRHVVSAAYDRTIKLWD 344
Query: 176 NDKGH 190
KG+
Sbjct: 345 LHKGY 349
>At3g49660.1 68416.m05427 transducin family protein / WD-40 repeat
family protein beta-transducin, Schizosaccharomyces
pombe, EMBL:CAA17803
Length = 317
Score = 31.9 bits (69), Expect = 0.35
Identities = 16/65 (24%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Frame = +2
Query: 5 LQLANEDYNLYTFDVRRLKEPVAIHMD----HTSAVIDVDYAPTGREFVAGSYDKTIRIF 172
L A+ D + T+ + + +P+A + H + + DV ++ R V+ S DKT++++
Sbjct: 39 LASASADKTIRTYTINTINDPIAEPVQEFTGHENGISDVAFSSDARFIVSASDDKTLKLW 98
Query: 173 QNDKG 187
+ G
Sbjct: 99 DVETG 103
Score = 31.1 bits (67), Expect = 0.62
Identities = 17/58 (29%), Positives = 30/58 (51%)
Frame = +2
Query: 14 ANEDYNLYTFDVRRLKEPVAIHMDHTSAVIDVDYAPTGREFVAGSYDKTIRIFQNDKG 187
A++D L +DV + + HT+ V++ P V+GS+D+T+RI+ G
Sbjct: 89 ASDDKTLKLWDVET-GSLIKTLIGHTNYAFCVNFNPQSNMIVSGSFDETVRIWDVTTG 145
Score = 30.7 bits (66), Expect = 0.81
Identities = 14/33 (42%), Positives = 19/33 (57%)
Frame = +2
Query: 86 HTSAVIDVDYAPTGREFVAGSYDKTIRIFQNDK 184
HT V++V PT +GS DKT+RI+ K
Sbjct: 284 HTETVMNVACHPTENLIASGSLDKTVRIWTQKK 316
Score = 28.3 bits (60), Expect = 4.3
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +2
Query: 86 HTSAVIDVDYAPTGREFVAGSYDKTIRIFQNDKGH 190
H+ V VD+ G V+ SYD RI+ + GH
Sbjct: 154 HSDPVTAVDFNRDGSLIVSSSYDGLCRIWDSGTGH 188
>At3g10990.1 68416.m01327 F-box family protein contains
TIGRfam:TIGR01640 F-box protein interaction domain
Length = 177
Score = 31.9 bits (69), Expect = 0.35
Identities = 13/16 (81%), Positives = 14/16 (87%)
Frame = -1
Query: 618 SYIFYYNIHINTIIRL 571
SY+FYYNI NTIIRL
Sbjct: 151 SYVFYYNIERNTIIRL 166
>At2g46340.1 68415.m05768 phytochrome A supressor spa1 (SPA1)
identical to phytochrome A supressor spa1 (GI:4809171)
[Arabidopsis thaliana]; contains 8 WD-40 repeats (Pfam
PF00400) (1 weak)
Length = 1029
Score = 31.9 bits (69), Expect = 0.35
Identities = 17/63 (26%), Positives = 32/63 (50%)
Frame = +2
Query: 5 LQLANEDYNLYTFDVRRLKEPVAIHMDHTSAVIDVDYAPTGREFVAGSYDKTIRIFQNDK 184
L + DY +Y +D+R +K P H AV V + + V+ S D +++++ +K
Sbjct: 866 LAFGSADYKVYCYDLRYVKTPWCTLAGHEKAVSYVKFMDS-ETIVSASTDNSLKLWNLNK 924
Query: 185 GHS 193
+S
Sbjct: 925 TNS 927
>At1g52730.2 68414.m05959 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to UNR-interacting protein (WD-40 repeat protein
PT-WD) (SP:Q9Y3F4) [Homo sapiens]
Length = 343
Score = 31.9 bits (69), Expect = 0.35
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +2
Query: 62 EPVAIHMDHTSAVIDVDYAPTGREFVAGSYDKTIRIFQ 175
E + + H V V + PTG + +GS D TIRI+Q
Sbjct: 261 EEIGCNKGHHGPVHCVRFTPTGLSYASGSEDGTIRIWQ 298
>At1g52730.1 68414.m05958 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to UNR-interacting protein (WD-40 repeat protein
PT-WD) (SP:Q9Y3F4) [Homo sapiens]
Length = 343
Score = 31.9 bits (69), Expect = 0.35
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +2
Query: 62 EPVAIHMDHTSAVIDVDYAPTGREFVAGSYDKTIRIFQ 175
E + + H V V + PTG + +GS D TIRI+Q
Sbjct: 261 EEIGCNKGHHGPVHCVRFTPTGLSYASGSEDGTIRIWQ 298
>At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1
protein (SCD1) contains Pfam PF02141: DENN (AEX-3)
domain; contains Pfam PF00400: WD domain, G-beta repeat
(8 copies); identical to stomatal cytokinesis defective
[Arabidopsis thaliana] GI:19743728; supporting cDNA
gi|19743727|gb|AY082605.1|; PMID 12874123
Length = 1187
Score = 31.9 bits (69), Expect = 0.35
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +2
Query: 86 HTSAVIDVDYAPTGREFVAGSYDKTIRIFQNDKG 187
H V V+Y+P + + GS D +R ++ND+G
Sbjct: 1061 HAGPVQSVEYSPFDKGIITGSADGLLRFWENDEG 1094
>At5g08390.1 68418.m00988 transducin family protein / WD-40 repeat
family protein similar to katanin p80 subunit
[Strongylocentrotus purpuratus] GI:3005601; contains
Pfam profile PF00400: WD domain, G-beta repeat
Length = 871
Score = 31.5 bits (68), Expect = 0.47
Identities = 16/55 (29%), Positives = 28/55 (50%)
Frame = +2
Query: 23 DYNLYTFDVRRLKEPVAIHMDHTSAVIDVDYAPTGREFVAGSYDKTIRIFQNDKG 187
D NL +D+R+ K + + HT V + + P GR V+G D ++++ G
Sbjct: 215 DTNLKIWDIRK-KGCIHTYKGHTRGVNVLRFTPDGRWIVSGGEDNVVKVWDLTAG 268
>At1g29260.1 68414.m03578 peroxisomal targeting signal type 2
receptor (PEX7) identical to peroxisomal targeting
signal type 2 receptor (Pex7p) (GI:9502414) [Arabidopsis
thaliana]; WD-40 repeat protein family member; contains
6 WD-40 repeats (PF00400); similar to peroxismal
targeting signal 2 receptor (PTS2R) (Peroxin-7)
(PEX7)(SP:O00628) [Homo sapiens]
Length = 317
Score = 31.1 bits (67), Expect = 0.62
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = +2
Query: 5 LQLANEDYNLYTFDVRRLKEPVAIHMDHTSAVIDVDYAPTGREFVAG-SYDKTI 163
L ++ D + +DVR + P+A+ H AV V ++P R +A SYD ++
Sbjct: 208 LATSSVDKTVKVWDVRSYRVPLAVLNGHGYAVRKVKFSPHRRSLIASCSYDMSV 261
>At5g23430.2 68418.m02749 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 836
Score = 30.7 bits (66), Expect = 0.81
Identities = 16/55 (29%), Positives = 28/55 (50%)
Frame = +2
Query: 23 DYNLYTFDVRRLKEPVAIHMDHTSAVIDVDYAPTGREFVAGSYDKTIRIFQNDKG 187
D NL +D+R+ K + + HT V + + P GR V+G D ++++ G
Sbjct: 122 DTNLKIWDIRK-KGCIHTYKGHTRGVNVLRFTPDGRWVVSGGEDNIVKVWDLTAG 175
>At5g23430.1 68418.m02748 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
katanin p80 subunit (GI:3005601) [Strongylocentrotus
purpuratus]
Length = 837
Score = 30.7 bits (66), Expect = 0.81
Identities = 16/55 (29%), Positives = 28/55 (50%)
Frame = +2
Query: 23 DYNLYTFDVRRLKEPVAIHMDHTSAVIDVDYAPTGREFVAGSYDKTIRIFQNDKG 187
D NL +D+R+ K + + HT V + + P GR V+G D ++++ G
Sbjct: 122 DTNLKIWDIRK-KGCIHTYKGHTRGVNVLRFTPDGRWVVSGGEDNIVKVWDLTAG 175
>At3g47890.1 68416.m05222 ubiquitin carboxyl-terminal
hydrolase-related contains Pfam profiles PF00443:
Ubiquitin carboxyl-terminal hydrolase, PF04780: Protein
of unknown function (DUF629), PF04781: Protein of
unknown function (DUF627)
Length = 1568
Score = 30.7 bits (66), Expect = 0.81
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +2
Query: 92 SAVIDVDYAPTGREFVAGSYDKTIRIFQNDKGHSRDVYHTKRMQRLTCVK 241
SA+I ++ + F GSY+K IR+ ++ +D R+Q CVK
Sbjct: 13 SALIKLECEKALKSFGRGSYNKAIRLIKDSCSRHQDSALIHRVQGTICVK 62
>At3g06880.1 68416.m00817 transducin family protein / WD-40 repeat
family protein similar to PAK/PLC-interacting protein 1
(GI:4211689) {Homo sapiens}
Length = 1115
Score = 30.7 bits (66), Expect = 0.81
Identities = 15/35 (42%), Positives = 21/35 (60%)
Frame = +2
Query: 83 DHTSAVIDVDYAPTGREFVAGSYDKTIRIFQNDKG 187
+H S V + TG ++GS DKTIR++Q KG
Sbjct: 893 EHKSTVTCFSLSETGECVLSGSADKTIRVWQIVKG 927
>At2g32700.5 68415.m04001 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 785
Score = 30.7 bits (66), Expect = 0.81
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +2
Query: 5 LQLANEDYNLYTFDVRRLKEPVAIHMDHTSAVIDVDYAPTGREFVAGSYDKTIRIFQ-ND 181
L A D ++ +++ L+ + +H + DV + P + S+DKTI+I+ +D
Sbjct: 523 LASAGHDKKVFIWNMETLQVE-STPEEHAHIITDVRFRPNSTQLATSSFDKTIKIWDASD 581
Query: 182 KGH 190
G+
Sbjct: 582 PGY 584
>At2g32700.4 68415.m04000 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 30.7 bits (66), Expect = 0.81
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +2
Query: 5 LQLANEDYNLYTFDVRRLKEPVAIHMDHTSAVIDVDYAPTGREFVAGSYDKTIRIFQ-ND 181
L A D ++ +++ L+ + +H + DV + P + S+DKTI+I+ +D
Sbjct: 525 LASAGHDKKVFIWNMETLQVE-STPEEHAHIITDVRFRPNSTQLATSSFDKTIKIWDASD 583
Query: 182 KGH 190
G+
Sbjct: 584 PGY 586
>At2g32700.3 68415.m03999 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 30.7 bits (66), Expect = 0.81
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +2
Query: 5 LQLANEDYNLYTFDVRRLKEPVAIHMDHTSAVIDVDYAPTGREFVAGSYDKTIRIFQ-ND 181
L A D ++ +++ L+ + +H + DV + P + S+DKTI+I+ +D
Sbjct: 525 LASAGHDKKVFIWNMETLQVE-STPEEHAHIITDVRFRPNSTQLATSSFDKTIKIWDASD 583
Query: 182 KGH 190
G+
Sbjct: 584 PGY 586
>At2g32700.2 68415.m03998 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 30.7 bits (66), Expect = 0.81
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +2
Query: 5 LQLANEDYNLYTFDVRRLKEPVAIHMDHTSAVIDVDYAPTGREFVAGSYDKTIRIFQ-ND 181
L A D ++ +++ L+ + +H + DV + P + S+DKTI+I+ +D
Sbjct: 525 LASAGHDKKVFIWNMETLQVE-STPEEHAHIITDVRFRPNSTQLATSSFDKTIKIWDASD 583
Query: 182 KGH 190
G+
Sbjct: 584 PGY 586
>At2g32700.1 68415.m03997 WD-40 repeat family protein contains 7
WD-40 repeats ; similar to LEUNIG
(GP:11141605)[Arabidopsis thaliana]
Length = 787
Score = 30.7 bits (66), Expect = 0.81
Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Frame = +2
Query: 5 LQLANEDYNLYTFDVRRLKEPVAIHMDHTSAVIDVDYAPTGREFVAGSYDKTIRIFQ-ND 181
L A D ++ +++ L+ + +H + DV + P + S+DKTI+I+ +D
Sbjct: 525 LASAGHDKKVFIWNMETLQVE-STPEEHAHIITDVRFRPNSTQLATSSFDKTIKIWDASD 583
Query: 182 KGH 190
G+
Sbjct: 584 PGY 586
>At3g47910.1 68416.m05224 expressed protein low similarity to
nonmuscle myosin heavy chain (NMHC) [Homo sapiens]
GI:189036; contains Pfam profiles PF04780: Protein of
unknown function (DUF629), PF04781: Protein of unknown
function (DUF627)
Length = 1290
Score = 30.3 bits (65), Expect = 1.1
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +2
Query: 92 SAVIDVDYAPTGREFVAGSYDKTIRIFQNDKGHSRDVYHTKRMQRLTCVK 241
S+V+ ++ + F GSY+K IR+ ++ +D R+Q CVK
Sbjct: 53 SSVVKLECEKALKSFGRGSYNKAIRLIKDSCSRHQDSALIHRVQGTICVK 102
>At2g16405.1 68415.m01878 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to WD-repeat protein 13 (SP:Q9H1Z4) [Homo
sapiens]
Length = 482
Score = 30.3 bits (65), Expect = 1.1
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Frame = +2
Query: 56 LKEPVAIHM--DHTSAVIDVDYAPTGREFVAGSYDKTIRIFQNDKG 187
L+EP + H+ V D D++ + + S DKTIR+++ +G
Sbjct: 203 LEEPSVLKQLTGHSKDVTDFDFSSNNQYIASSSLDKTIRVWELSRG 248
>At5g54520.1 68418.m06788 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to pre-mRNA splicing
factor PRP17 (SP:O60508) [Homo sapiens]
Length = 457
Score = 29.5 bits (63), Expect = 1.9
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = +2
Query: 5 LQLANEDYNLYTFDV-RRLKEPVAIHMDHTSAVIDVDYAPTGREFVAGSYDKTIRIFQND 181
L A D +Y ++V K+ V + H + V DV ++ G ++ YD T R+F +
Sbjct: 176 LASAGLDGAVYVWNVWSNDKKKVRAFLHHNAPVKDVKWSKQGLSLLSCGYDCTSRLFDVE 235
Query: 182 KG 187
+G
Sbjct: 236 RG 237
>At3g44530.1 68416.m04786 transducin family protein / WD-40 repeat
family protein contains 6 (4 significant) WD-40 repeats
(PF0400); nuclear protein HIRA, mouse, PIR:S68141
Length = 1051
Score = 29.5 bits (63), Expect = 1.9
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +2
Query: 44 DVRRLKEPVAIHMDHTSAVIDVDYAPTGREFVAGSYDKTIRIFQNDKG 187
DV K + + HT+ V+D++++P +GS D T+ I+ G
Sbjct: 104 DVENWKAVMTLR-GHTADVVDLNWSPDDSMLASGSLDNTVHIWNMRTG 150
>At5g14530.1 68418.m01703 transducin family protein / WD-40 repeat
family protein similar to Will die slowly protein
(SP:Q9V3J8) [Drosophila melanogaster] ; contains Pfam
PF00400: WD domain, G-beta repeat (4 copies, 1 weak)
Length = 330
Score = 29.1 bits (62), Expect = 2.5
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +1
Query: 265 MSGSDEMNIRMWKARASEKLGVLKPRERQALNY 363
MSGS + ++R+W R + G+L R R A+ Y
Sbjct: 130 MSGSLDRSVRLWDLRVNACQGILHLRGRPAVAY 162
>At2g43770.1 68415.m05441 transducin family protein / WD-40 repeat
family protein contains 7 WD-40 repeats (PF00400);
similar to U5 snRNP-specific 40 kDa protein (GI:3820594)
[Homo sapiens]
Length = 343
Score = 29.1 bits (62), Expect = 2.5
Identities = 12/40 (30%), Positives = 23/40 (57%)
Frame = +2
Query: 56 LKEPVAIHMDHTSAVIDVDYAPTGREFVAGSYDKTIRIFQ 175
L+ P+ + H SAV + + P G +GS+D+ I +++
Sbjct: 42 LEAPIMLLSGHPSAVYTMKFNPAGTLIASGSHDREIFLWR 81
>At2g05720.1 68415.m00613 transducin family protein / WD-40 repeat
family protein Similar to U4/U6 small nuclear
ribonucleoprotein hPrp4 (gi:2708305)[Homo sapiens];
contains 4 WD-40 repeats
Length = 276
Score = 29.1 bits (62), Expect = 2.5
Identities = 13/44 (29%), Positives = 22/44 (50%)
Frame = +2
Query: 41 FDVRRLKEPVAIHMDHTSAVIDVDYAPTGREFVAGSYDKTIRIF 172
+D+R + + I H V+ VD++P G +G D RI+
Sbjct: 157 WDLRTARN-ILIFQGHIKQVLSVDFSPNGYHLASGGEDNQCRIW 199
>At5g26742.1 68418.m03161 DEAD box RNA helicase (RH3) nearly
identical to RNA helicase [Arabidopsis thaliana]
GI:3775987; contains Pfam profiles PF00270: DEAD/DEAH
box helicase, PF00271: Helicase conserved C-terminal
domain, PF00098: Zinc knuckle
Length = 747
Score = 28.7 bits (61), Expect = 3.3
Identities = 28/84 (33%), Positives = 36/84 (42%), Gaps = 2/84 (2%)
Frame = +2
Query: 293 ECGRPGHLKNLVCLSLVKDKPLIMRKP*RRSLRRIHK*SVSLVTDTSLNTY*MRRKNYEL 472
E +P K CLSL DKP R RRIH S SL+ +++ T N L
Sbjct: 17 EISKPNSKKRSNCLSLSLDKPFFTPLSLVRRTRRIH--SSSLLVPSAVAT-----PNSVL 69
Query: 473 SERKRREKKQTDRPQ--*KGDNTN 538
SE + +D + GDN N
Sbjct: 70 SEEAFKSLGLSDHDEYDLDGDNNN 93
>At5g25150.1 68418.m02981 transducin family protein / WD-40 repeat
family protein similar to TBP-associated factor
(GI:1732075) [Homo sapiens] and to 100 kDa subunit of
Pol II transcription factor (GI:1491718) {Homo sapiens];
contains Pfam PF00400: WD domain, G-beta repeat (6
copies)|8689032|gb|AV528749.1|AV528749
Length = 666
Score = 28.3 bits (60), Expect = 4.3
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +2
Query: 62 EPVAIHMDHTSAVIDVDYAPTGREFVAGSYDKTIRIFQNDKG 187
+P+ I H S DVD+ P GS DKT+R++ G
Sbjct: 493 QPLRIMAGHLS---DVDWHPNCNYIATGSSDKTVRLWDVQTG 531
>At5g24630.1 68418.m02909 expressed protein ; expression supported
by MPSS
Length = 531
Score = 28.3 bits (60), Expect = 4.3
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -2
Query: 518 TVGGLFASFLFVFSRIVRSSFCAFSMCLGTC 426
T G ++ F+ V SS C FS C GTC
Sbjct: 374 TTGDMYLDLKEHFALYVFSSSCTFSDCKGTC 404
>At5g23730.1 68418.m02782 transducin family protein / WD-40 repeat
family protein contains similarity to photomorphogenesis
repressor protein; contains Pfam PF00400: WD domain,
G-beta repeat (5 copies)
Length = 243
Score = 28.3 bits (60), Expect = 4.3
Identities = 14/51 (27%), Positives = 25/51 (49%)
Frame = +2
Query: 35 YTFDVRRLKEPVAIHMDHTSAVIDVDYAPTGREFVAGSYDKTIRIFQNDKG 187
Y +D+R+L +P HT V V + G AG+ D ++++ + G
Sbjct: 95 YVYDIRKLVDPALTLQGHTKTVSYVRFLDGGTVVTAGT-DGCLKLWSVEDG 144
>At3g01175.1 68416.m00022 expressed protein
Length = 401
Score = 28.3 bits (60), Expect = 4.3
Identities = 15/34 (44%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = -2
Query: 554 LFLRHNWYCPLF-TVGGLFASFLFVFSRIVRSSF 456
L+L W P F + F+S LF FS++V SSF
Sbjct: 44 LYLFFLWLLPPFQALYNAFSSVLFTFSKLVSSSF 77
>At2g35050.1 68415.m04300 protein kinase family protein contains
Pfam profile: PF00069 Eukaryotic protein kinase domain
Length = 1257
Score = 28.3 bits (60), Expect = 4.3
Identities = 19/60 (31%), Positives = 28/60 (46%)
Frame = +1
Query: 367 EALKEKFATHPQVKRIARHRHVPKHILNAQKELRTIREKTKRKEANRPPTVKRGQYQLCL 546
+ALKE+ P +I+ PK ++ +K LRT +EKT + K Q CL
Sbjct: 596 QALKEEA---PISMKISNSTPDPKSLVYPEKSLRTSQEKTGAFDTTNEGMKKNQDNQFCL 652
>At1g26620.1 68414.m03242 expressed protein ; expression supported
by MPSS
Length = 867
Score = 28.3 bits (60), Expect = 4.3
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +3
Query: 468 NYPRENEEKRSKQTAHSKKGTIPIVSEKKRHVVKED 575
N PR + +R + ++ T+P +S RH V ED
Sbjct: 743 NKPRRGQARRGRPKRDFQRDTLPGLSSLSRHEVTED 778
>At5g51870.1 68418.m06430 MADS-box protein (AGL71) contains Pfam
profile PF00319: SRF-type transcription factor
(DNA-binding and dimerisation domain)
Length = 207
Score = 27.9 bits (59), Expect = 5.7
Identities = 19/66 (28%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Frame = +1
Query: 280 EMNIRMWKARASE----KLGVLKPRERQALNYAEALKEKFATHPQVKRIARHRHVPKHIL 447
E ++R+ ++R +E +L LK +ER+ LN + L E+ H K H KH
Sbjct: 133 EKSLRIVRSRKAELYADQLKKLKEKERELLNERKRLLEEVNMHHSSKGNTEGGHRTKHSS 192
Query: 448 NAQKEL 465
+ +L
Sbjct: 193 EVETDL 198
>At5g36770.1 68418.m04403 expressed protein hypothetical proteins -
Arabidopsis thaliana
Length = 335
Score = 27.9 bits (59), Expect = 5.7
Identities = 13/50 (26%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Frame = +3
Query: 441 HTECAERTTNYPRENEEKRSKQTAHSK----KGTIPIVSEKKRHVVKEDE 578
H + T + ++E K +++ ++K GT+PI+ K++HV++ E
Sbjct: 52 HHNIRMKPTGWDSQSENKFAERRHNNKIECPNGTVPILRAKEKHVIQYQE 101
>At5g36680.1 68418.m04389 hypothetical protein similar to unknown
protein (emb CAB87684.1) contains Pfam profile PF03080:
Arabidopsis proteins of unknown function
Length = 362
Score = 27.9 bits (59), Expect = 5.7
Identities = 13/50 (26%), Positives = 28/50 (56%), Gaps = 4/50 (8%)
Frame = +3
Query: 441 HTECAERTTNYPRENEEKRSKQTAHSK----KGTIPIVSEKKRHVVKEDE 578
H + T + ++E K +++ ++K GT+PI+ K++HV++ E
Sbjct: 52 HHNIRMKPTGWDSQSENKFAERRHNNKIECPNGTVPILRAKEKHVIQYQE 101
>At5g27570.1 68418.m03302 WD-40 repeat family protein contains 5
WD-40 repeats (PF00400); similar to fizzy1 (GI:3298595)
{Xenopus laevis}; similar to "Will die slowly" protein,
Drosophia; putative cdc20 protein - Arabidopsis
thaliana, EMBL:AF029262
Length = 411
Score = 27.9 bits (59), Expect = 5.7
Identities = 12/52 (23%), Positives = 25/52 (48%)
Frame = +2
Query: 23 DYNLYTFDVRRLKEPVAIHMDHTSAVIDVDYAPTGREFVAGSYDKTIRIFQN 178
D + DVR V ++ HT V + ++ +G++ +G D + I+ +
Sbjct: 196 DGKIVNNDVRIRSSIVETYLGHTEEVCGLKWSESGKKLASGGNDNVVHIWDH 247
>At4g35140.1 68417.m04996 transducin family protein / WD-40 repeat
family protein contains 6 (3 significant) WD-40 repeats;
similar to PC326 protein (GI:200241) (PIR2:S37694)
[Mus musculus]; Human (H326) mRNA, Homo sapiens,
gb:U06631
Length = 496
Score = 27.9 bits (59), Expect = 5.7
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +1
Query: 250 RYKYVMSGSDEMNIRMWKARASEKLGVLKPRERQALNYAE 369
R +YV+SGSD I +W+ + E + V++ +R +N E
Sbjct: 345 RSEYVVSGSDCGRIFIWRKKGGELIRVME-ADRHVVNCIE 383
>At2g03240.1 68415.m00277 EXS family protein / ERD1/XPR1/SYG1 family
protein similar to PHO1 protein [Arabidopsis thaliana]
GI:20069032; contains Pfam profiles PF03105: SPX domain,
PF03124: EXS family
Length = 823
Score = 27.9 bits (59), Expect = 5.7
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = -2
Query: 527 PLFTVGGLFASFLFVFSRIVRSSFCAFSMCLGTCL 423
PLF + G+F + F+ RSS F CL CL
Sbjct: 545 PLFLLTGMFVVLVLPFNIFYRSSRFFFLTCLFHCL 579
>At1g65590.1 68414.m07441 glycosyl hydrolase family 20 protein
contains Pfam PF00728: Glycosyl hydrolase family 20,
catalytic domain; contains Pfam PF02838: Glycosyl
hydrolase family 20, domain 2; similar to
Beta-hexosaminidase beta chain precursor (EC 3.2.1.52)
(N-acetyl-beta- glucosaminidase)
(Beta-N-acetylhexosaminidase) (Hexosaminidase B)
(Swiss-Prot:P07686) [Homo sapiens]
Length = 535
Score = 27.9 bits (59), Expect = 5.7
Identities = 15/51 (29%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
Frame = +1
Query: 244 VSRYKYVMSGSDEMNIRMWKA--RASEKLGVLKPRERQALNYAEALKEKFA 390
+ ++K+V G DE+N W A R ++ L + E++A Y +K A
Sbjct: 317 IFKFKFVHLGGDEVNTTCWSATPRIAQWLKKHRMSEKEAYQYFVLRAQKIA 367
>At5g53500.1 68418.m06649 WD-40 repeat family protein contains Pfam
PF00400: WD domain, G-beta repeat; similar to WD-repeat
protein 5 (WD repeat protein BIG-3) (SP: Q9UGP9) [Homo
sapiens]
Length = 654
Score = 27.5 bits (58), Expect = 7.6
Identities = 10/28 (35%), Positives = 19/28 (67%)
Frame = +1
Query: 247 SRYKYVMSGSDEMNIRMWKARASEKLGV 330
S+ Y++S S + +R+WK +++ LGV
Sbjct: 337 SKDNYLLSASMDKTVRLWKVGSNDCLGV 364
>At5g27945.1 68418.m03364 transducin family protein / WD-40 repeat
family protein fizzy-related (FZR); contains 6 WD-40
repeats (PF00400); WD-repeat protein,
carrot,(gi:2253631) PIR:T14352
Length = 428
Score = 27.5 bits (58), Expect = 7.6
Identities = 12/57 (21%), Positives = 25/57 (43%)
Frame = +2
Query: 23 DYNLYTFDVRRLKEPVAIHMDHTSAVIDVDYAPTGREFVAGSYDKTIRIFQNDKGHS 193
D + DVR + ++ HT V + ++ +G++ +G D + I+ S
Sbjct: 214 DGKIVNNDVRIRSSIIGTYVGHTEEVCGLKWSESGKKLASGGNDNVVHIWDRSLASS 270
>At3g21060.1 68416.m02662 transducin family protein / WD-40 repeat
family protein contains 4 WD-40 repeats (PF00400);
similar to Retinoblastoma-binding protein 5 (RBBP-5)
[Homo sapiens](RBQ-3)
Length = 547
Score = 27.5 bits (58), Expect = 7.6
Identities = 11/56 (19%), Positives = 28/56 (50%)
Frame = +2
Query: 11 LANEDYNLYTFDVRRLKEPVAIHMDHTSAVIDVDYAPTGREFVAGSYDKTIRIFQN 178
+ N + D + ++ + + V ++ ++ G+ + S+D+TIRI++N
Sbjct: 190 IGNSKGEILIVDYKSVRVLALVSASGAAPVKNIVFSRNGQYLLTNSHDRTIRIYEN 245
>At3g14710.1 68416.m01860 F-box family protein ; similar to SKP1
interacting partner 2 (SKIP2) TIGR_Ath1:At5g67250
Length = 442
Score = 27.5 bits (58), Expect = 7.6
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -3
Query: 307 WPSTFLYSFRQIHSLHIYI*RPFH 236
WP TFL SF + SL + + + FH
Sbjct: 286 WPKTFLRSFTCVTSLALVLSKDFH 309
>At2g40820.1 68415.m05038 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 903
Score = 27.5 bits (58), Expect = 7.6
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +1
Query: 379 EKFATHPQVKRIARHRHVPKHILNAQKELRTIREKTKRKEA 501
EK Q R R H P ++ Q ELR ++ + + K A
Sbjct: 237 EKLVEEVQEARRIRRLHKPTMVIGMQHELRDLKSQIQEKSA 277
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,393,752
Number of Sequences: 28952
Number of extensions: 281659
Number of successful extensions: 1129
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 999
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1129
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1255974912
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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