Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40158
         (501 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_34773| Best HMM Match : No HMM Matches (HMM E-Value=.)              55   4e-08
SB_23054| Best HMM Match : No HMM Matches (HMM E-Value=.)              39   0.003
SB_43903| Best HMM Match : FHA (HMM E-Value=4.6e-13)                   32   0.23 
SB_39560| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00055)              32   0.23 
SB_23934| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-07)                32   0.23 
SB_24514| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.31 
SB_39497| Best HMM Match : zf-C3HC4 (HMM E-Value=5.1e-12)              31   0.40 
SB_26589| Best HMM Match : DUF477 (HMM E-Value=5.2e-18)                31   0.40 
SB_698| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00037)                31   0.53 
SB_49946| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.93 
SB_32416| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0021)               30   1.2  
SB_39478| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   1.6  
SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.2  
SB_48731| Best HMM Match : zf-C3HC4 (HMM E-Value=6.5e-08)              29   2.2  
SB_45313| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.8  
SB_38572| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0034)               28   5.0  
SB_15794| Best HMM Match : DUF1605 (HMM E-Value=5.9e-12)               27   6.6  
SB_54717| Best HMM Match : Aldo_ket_red (HMM E-Value=0)                27   6.6  
SB_55478| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_40933| Best HMM Match : DUF548 (HMM E-Value=1.7)                    27   8.7  
SB_17212| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.7  
SB_27518| Best HMM Match : RWD (HMM E-Value=0.015)                     27   8.7  

>SB_34773| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 212

 Score = 54.8 bits (126), Expect = 4e-08
 Identities = 19/35 (54%), Positives = 26/35 (74%)
 Frame = +2

Query: 107 KGDKKRFEVKKWNAVALWAWDIVVDNCAICRNHIM 211
           K  +K F +KKWNA+A+W+WD+  D CAICR  +M
Sbjct: 25  KESQKMFSLKKWNAIAMWSWDVECDTCAICRVQVM 59


>SB_23054| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 482

 Score = 38.7 bits (86), Expect = 0.003
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +1

Query: 283 CNHAFHFHCISRWLKTRQVCPLDNR 357
           C H FH  CI  WL T+ +CP+D +
Sbjct: 230 CRHVFHRDCIDSWLATQSICPVDGQ 254


>SB_43903| Best HMM Match : FHA (HMM E-Value=4.6e-13)
          Length = 553

 Score = 32.3 bits (70), Expect = 0.23
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +1

Query: 283 CNHAFHFHCISRWLKTRQVCPL 348
           C+H+F  +C+  WL+ R  CP+
Sbjct: 386 CSHSFCEYCLQSWLRKRNTCPI 407


>SB_39560| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00055)
          Length = 545

 Score = 32.3 bits (70), Expect = 0.23
 Identities = 11/15 (73%), Positives = 11/15 (73%)
 Frame = +1

Query: 283 CNHAFHFHCISRWLK 327
           CNH FH  CI RWLK
Sbjct: 379 CNHDFHSKCIDRWLK 393


>SB_23934| Best HMM Match : zf-C3HC4 (HMM E-Value=1e-07)
          Length = 617

 Score = 32.3 bits (70), Expect = 0.23
 Identities = 12/28 (42%), Positives = 14/28 (50%)
 Frame = +1

Query: 262 CTVAWGVCNHAFHFHCISRWLKTRQVCP 345
           CT+    C H+FH HCI  WL      P
Sbjct: 571 CTLLGLPCGHSFHQHCIEVWLAGDNTAP 598


>SB_24514| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 402

 Score = 31.9 bits (69), Expect = 0.31
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +1

Query: 283 CNHAFHFHCISRWL-KTRQVCPLDNREWEFQK 375
           C+HA+H  C+  WL + ++ CP+  R  E  K
Sbjct: 319 CDHAYHCKCVDPWLTEGKRTCPVCKRPVETSK 350


>SB_39497| Best HMM Match : zf-C3HC4 (HMM E-Value=5.1e-12)
          Length = 558

 Score = 31.5 bits (68), Expect = 0.40
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 283 CNHAFHFHCISRWLKTRQVCPL 348
           C H FH  C+  WL +   CPL
Sbjct: 232 CRHEFHKECVDPWLLSNFTCPL 253


>SB_26589| Best HMM Match : DUF477 (HMM E-Value=5.2e-18)
          Length = 398

 Score = 31.5 bits (68), Expect = 0.40
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 280 VCNHAFHFHCISRWLKTRQVCPL 348
           VC H +   C+SRWL+    CP+
Sbjct: 279 VCGHKYCEPCLSRWLENNTTCPI 301


>SB_698| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00037)
          Length = 303

 Score = 31.1 bits (67), Expect = 0.53
 Identities = 14/27 (51%), Positives = 14/27 (51%), Gaps = 1/27 (3%)
 Frame = +1

Query: 283 CNHAFHFHCISRWLK-TRQVCPLDNRE 360
           C H FH  CI  WL  T   CPLD  E
Sbjct: 275 CRHNFHSACIRTWLTYTSCKCPLDGLE 301


>SB_49946| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 139

 Score = 30.3 bits (65), Expect = 0.93
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +1

Query: 283 CNHAFHFHCISRWLKTRQVCPLDNRE 360
           C+H FH  CI  WL+    CP+   E
Sbjct: 80  CDHLFHPGCILPWLEKTNSCPVCRHE 105


>SB_32416| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0021)
          Length = 358

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +1

Query: 283 CNHAFHFHCISRWLKTRQVCPLDNREWEFQ 372
           C H +H  CI +WLK R     D  +W+ +
Sbjct: 311 CLHEYHTRCIDKWLKNR-----DQSQWKLE 335


>SB_39478| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 254

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 3/26 (11%)
 Frame = +1

Query: 280 VCNHAFHFHCISRWLKT---RQVCPL 348
           +C H F + C+ RWL+T   R +CP+
Sbjct: 77  MCGHLFCWPCLHRWLETRPNRSMCPV 102


>SB_3291| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 760

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
 Frame = +2

Query: 107 KGDKKRFEVKKWNAVALW-AWDIVVDNCAICRNHIMDLCIECQANQASATMKNAQLLGVF 283
           K  K  FE KK NA AL    ++ V    I RN   ++C  C+A + S+ ++   L    
Sbjct: 162 KEGKLHFEAKKRNAPALPPVRELKVLKDNISRNSSSEICPSCRALETSSLIEFFSLSAKT 221

Query: 284 VIMHSISTV 310
           ++   ++T+
Sbjct: 222 IVSSCLATL 230


>SB_48731| Best HMM Match : zf-C3HC4 (HMM E-Value=6.5e-08)
          Length = 688

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 10/22 (45%), Positives = 11/22 (50%)
 Frame = +1

Query: 283 CNHAFHFHCISRWLKTRQVCPL 348
           C H F   CIS W    Q CP+
Sbjct: 499 CKHIFCEDCISLWFDREQTCPM 520


>SB_45313| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 71

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 226 MPSKSSLSHYEECTVAWGVCNHAFHFHCISR 318
           +P  S +  YE+ T+AW  C++     C+SR
Sbjct: 37  VPRNSRIPSYEQATIAWATCDYI--CVCVSR 65


>SB_38572| Best HMM Match : zf-C3HC4 (HMM E-Value=0.0034)
          Length = 671

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +1

Query: 220 YRMPSKSSLSHYEECTVAWGVC--NHAFHFHCISRWLKTRQVCP 345
           ++ P+KS++   E+      VC   H F   C+  WL+T + CP
Sbjct: 96  HQCPTKSAILDLEKVKEPV-VCPNQHVFCSPCLDLWLRTNRYCP 138


>SB_15794| Best HMM Match : DUF1605 (HMM E-Value=5.9e-12)
          Length = 655

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -3

Query: 436 SEDVKLLCRMQLF*MTFNDHTFGTPILYCLVDKLVESSTNG 314
           SE+ K L  + ++  TF+D      ++YCL+D +  S   G
Sbjct: 22  SEETKEL--LAVYHKTFDDDRVDLDLIYCLIDHICNSGQQG 60


>SB_54717| Best HMM Match : Aldo_ket_red (HMM E-Value=0)
          Length = 333

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 24/61 (39%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
 Frame = -3

Query: 304 GNGMHDYKHPKQ--LCILHSG*GLICLAFDTQIHYVISANSTVVDNNIPSPECYCIPLFY 131
           G G HD  H KQ  L  L SG  LI  A  ++ H   S    V  +NIP  E Y +   Y
Sbjct: 80  GLGAHDI-HSKQAVLWALESGYRLIDTA--SRYHNEQSVGEAVRCSNIPRCEIYVVTKVY 136

Query: 130 F 128
           F
Sbjct: 137 F 137


>SB_55478| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 126

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = -1

Query: 252 VAEA*FAWHSIHRSIM*FRQIAQLSTTISQAQSA-TAFHFFTSNLFLSPLP 103
           V  A  ++  +H +++  ++I   +T I   ++    F+F TS+L +SPLP
Sbjct: 48  VPSAPHSFGEVHTAVVGHQKIKPKNTLIHDIRNLHLVFYFRTSDLHVSPLP 98


>SB_40933| Best HMM Match : DUF548 (HMM E-Value=1.7)
          Length = 682

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 182 NCAICRNHIMDLCIECQANQASATMKNAQLL 274
           NC+I RN   ++C  C+A + S +   A LL
Sbjct: 89  NCSISRNSSSEICPSCRALETSLSSCLATLL 119


>SB_17212| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 426

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = +2

Query: 191 ICRNHIMDLCIECQANQASATMKNAQLLGVFVIMHSISTVFP 316
           ICRN   ++C  C+A   S+ ++   L    ++   ++T+ P
Sbjct: 149 ICRNSSSEICPSCRALDTSSLIEFFLLSAKTIVSSCLATLLP 190


>SB_27518| Best HMM Match : RWD (HMM E-Value=0.015)
          Length = 277

 Score = 27.1 bits (57), Expect = 8.7
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = +1

Query: 283 CNHAFHFHCISRWLKT 330
           C H FH+ C+ +++KT
Sbjct: 254 CAHVFHYGCLDKYMKT 269


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,877,506
Number of Sequences: 59808
Number of extensions: 350267
Number of successful extensions: 738
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 666
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 737
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1087245449
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)