Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40157
         (683 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.       24   1.3  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        22   5.4  
AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory recept...    22   5.4  
AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment h...    21   7.1  

>U09586-3|AAC47272.1|  470|Tribolium castaneum integrase protein.
          Length = 470

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 9/18 (50%), Positives = 10/18 (55%)
 Frame = -2

Query: 346 CHHTTSGQRPSQGHCTPL 293
           C  T S  RP QG  TP+
Sbjct: 175 CQKTKSSNRPHQGPLTPI 192


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 12/47 (25%), Positives = 21/47 (44%)
 Frame = +1

Query: 361 QDRLSKFEEDDSETPVWQDRLDYLCSVGDKETATALATSKYEDSTLT 501
           +D   +F E+ +   VW+   D+  S   K+TA      +Y    +T
Sbjct: 270 EDIQVRFFEEKNGKVVWEGFGDFQPSQVHKQTAICFKAPRYHTLDIT 316


>AM292362-1|CAL23174.2|  398|Tribolium castaneum gustatory receptor
           candidate 41 protein.
          Length = 398

 Score = 21.8 bits (44), Expect = 5.4
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +2

Query: 368 GYLNLKKTTLKHPFGKIGLITCVQLETKKQ 457
           G+LN+   TL   FG   +   + L+ +KQ
Sbjct: 365 GFLNIDYGTLYSLFGSTAMNVIILLQFQKQ 394


>AY695258-1|AAW21975.1|  232|Tribolium castaneum muscle segment
           homeodomain protein protein.
          Length = 232

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 14/58 (24%), Positives = 25/58 (43%)
 Frame = +1

Query: 295 EVCNDLGWAFDQKLYDDMTKENQDRLSKFEEDDSETPVWQDRLDYLCSVGDKETATAL 468
           E+ + + ++ +  L     +E + RLS  ++DD    V  D  D   S+      T L
Sbjct: 7   EIKSKISFSVESLLSKKEDEEVEHRLSDRDDDDENITVDDDDTDGRESLSPSSAHTVL 64


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 143,626
Number of Sequences: 336
Number of extensions: 2821
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17906060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)