Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40157
(683 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC582.07c |rpn7||19S proteasome regulatory subunit Rpn7|Schizo... 39 8e-04
SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr... 33 0.051
SPBC36B7.06c |mug20||sequence orphan|Schizosaccharomyces pombe|c... 29 0.47
SPBC31F10.04c |srb4|med17|mediator complex subunit Srb4|Schizosa... 27 2.5
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom... 26 5.8
SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||... 26 5.8
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 26 5.8
SPAC8E11.01c ||SPAC959.01|beta-fructofuranosidase|Schizosaccharo... 25 7.7
SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces pomb... 25 7.7
>SPBC582.07c |rpn7||19S proteasome regulatory subunit
Rpn7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 409
Score = 38.7 bits (86), Expect = 8e-04
Identities = 36/158 (22%), Positives = 73/158 (46%), Gaps = 14/158 (8%)
Frame = +1
Query: 250 VMNGIKAGHMAPYYKEVCNDLGWA----FDQKLYDDMTKENQDRLSKFE---EDDSET-- 402
+ + I+ +AP YK + + + FD + M K+N+++L++F+ ED E
Sbjct: 48 LFSAIRDHDLAPLYKYLSENPKTSASIDFDSNFLNSMIKKNEEKLAEFDKAIEDAQELNG 107
Query: 403 -----PVWQDRLDYLCSVGDKETATALATSKYEDSTLTTNRGSMLYLLCLELLISMDVM* 567
+++ DY ++ D+E L +E +TLT + +L+ + D M
Sbjct: 108 EHEILEAMKNKADYYTNICDRERGVQLCDETFERATLTGMKIDVLFSKIRLAYVYAD-MR 166
Query: 568 RNGKSYQ*GSRVSR*RWRLAFRNKLKAYEAIYCLAVRD 681
G+ + + +N+LKAY+ IY +++R+
Sbjct: 167 VVGQLLEKLKPLIEKGGDWERKNRLKAYQGIYLMSIRN 204
Score = 25.8 bits (54), Expect = 5.8
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +2
Query: 572 MGKAINKAHELVDKGGDW 625
+G+ + K L++KGGDW
Sbjct: 168 VGQLLEKLKPLIEKGGDW 185
>SPCC364.04c |||CASP family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 633
Score = 32.7 bits (71), Expect = 0.051
Identities = 29/111 (26%), Positives = 44/111 (39%)
Frame = +1
Query: 265 KAGHMAPYYKEVCNDLGWAFDQKLYDDMTKENQDRLSKFEEDDSETPVWQDRLDYLCSVG 444
+A A KE C + W QKLY DM +EN + K E Q LD+
Sbjct: 164 EAEKRAAITKEEC-EKSWLEQQKLYKDMEQENASTIQKLTSKIRELQASQ--LDHDLQAS 220
Query: 445 DKETATALATSKYEDSTLTTNRGSMLYLLCLELLISMDVM*RNGKSYQ*GS 597
E+A +K + + + +EL + V+ +N K + GS
Sbjct: 221 QNESAGLDVNAKSAEVNAILSELDDANKIIVELQAEIAVLKQNTKEQKSGS 271
>SPBC36B7.06c |mug20||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 169
Score = 29.5 bits (63), Expect = 0.47
Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = -2
Query: 112 NVIKVCLEVNFQQ--IISLLTEQTKNKIKMHSTSAHK 8
N +K +EVN + I+ LLT K+KM TS HK
Sbjct: 127 NKLKCAMEVNIKTNYIVILLTSINLKKLKMIETSTHK 163
>SPBC31F10.04c |srb4|med17|mediator complex subunit
Srb4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 545
Score = 27.1 bits (57), Expect = 2.5
Identities = 11/21 (52%), Positives = 12/21 (57%)
Frame = +3
Query: 156 RREKHLNTWHWPESNLNSVYL 218
R E +TW WP N NSV L
Sbjct: 275 RDEIGSSTWSWPSQNCNSVLL 295
>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1188
Score = 25.8 bits (54), Expect = 5.8
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +1
Query: 286 YYKEVCNDLGWAFDQKLYDDMTKENQDRLSKFEEDDS 396
Y K++ N L DQ+ D ++E SKFE DDS
Sbjct: 991 YVKDMKNPLA---DQRASLDESRETTTASSKFESDDS 1024
>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 709
Score = 25.8 bits (54), Expect = 5.8
Identities = 9/23 (39%), Positives = 13/23 (56%)
Frame = +1
Query: 235 SVKGAVMNGIKAGHMAPYYKEVC 303
S+ A + + A H P+Y EVC
Sbjct: 316 SIFSATIGAVDAEHKIPFYSEVC 338
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 25.8 bits (54), Expect = 5.8
Identities = 12/42 (28%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = +1
Query: 340 DDMTKENQDRLSKFEEDDSETPVWQDRLDY-LCSVGDKETAT 462
D+ +NQ ++E++D+ + ++D LDY VG+ ++ T
Sbjct: 1932 DEEDLDNQGEEFEWEDEDNASSGYEDELDYNEDEVGENDSTT 1973
>SPAC8E11.01c
||SPAC959.01|beta-fructofuranosidase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 508
Score = 25.4 bits (53), Expect = 7.7
Identities = 6/18 (33%), Positives = 14/18 (77%)
Frame = +3
Query: 534 FRIAYFHGCNVKEWEKLS 587
+++ ++H N+++W KLS
Sbjct: 172 YKVLFYHSLNLRDWVKLS 189
>SPAC57A7.06 |||U3 snoRNP protein Utp14 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 929
Score = 25.4 bits (53), Expect = 7.7
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +1
Query: 340 DDMTKENQDRLSKFEEDDSETPVWQDRLDYLCSVG 444
D N +S EEDDS+ V D+L+ SVG
Sbjct: 95 DHKNLNNTKEISLNEEDDSDDSVNSDKLENEGSVG 129
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,560,055
Number of Sequences: 5004
Number of extensions: 49289
Number of successful extensions: 153
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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