Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40157
         (683 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0364 + 15178583-15178881,15179652-15179723,15179853-151799...    30   2.0  
04_04_0296 + 24216284-24216428,24216631-24216745,24217321-242174...    29   4.5  
11_04_0430 + 17653553-17654285,17654305-17654627,17654795-176549...    28   6.0  
07_01_0181 + 1274177-1274200,1274335-1276161,1276519-1277448,127...    28   7.9  

>06_02_0364 +
           15178583-15178881,15179652-15179723,15179853-15179917,
           15180890-15180934,15182493-15183170,15183376-15183410,
           15183647-15183736,15183896-15183985,15184164-15184262,
           15184938-15185013,15185473-15185588
          Length = 554

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 10/25 (40%), Positives = 13/25 (52%)
 Frame = -1

Query: 188 PMPCIQVFFPPLIAPFSIDCNASIY 114
           P PC  V   P + PFS+ C  + Y
Sbjct: 471 PFPCCHVIVYPFLVPFSLQCEVTNY 495


>04_04_0296 +
           24216284-24216428,24216631-24216745,24217321-24217411,
           24217495-24217640,24217745-24217964,24218037-24218145,
           24218273-24218441,24218546-24218720
          Length = 389

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +1

Query: 631 RNKLKAYEAIYCLAVRD 681
           +N+LK YE +YC+A R+
Sbjct: 177 KNRLKVYEGLYCMATRN 193


>11_04_0430 +
           17653553-17654285,17654305-17654627,17654795-17654921,
           17655123-17655338,17655463-17655494
          Length = 476

 Score = 28.3 bits (60), Expect = 6.0
 Identities = 13/44 (29%), Positives = 28/44 (63%)
 Frame = +1

Query: 316 WAFDQKLYDDMTKENQDRLSKFEEDDSETPVWQDRLDYLCSVGD 447
           W  D++  DD+ +E  +R+ + E +++E  V Q+++  L +VG+
Sbjct: 388 WDGDEE--DDVLEEVYERVEREEMEENEAGVQQEKIVQLANVGE 429


>07_01_0181 +
           1274177-1274200,1274335-1276161,1276519-1277448,
           1278314-1278367
          Length = 944

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = +1

Query: 325 DQKLYDDMTKENQDRLSKFEEDDSETPVWQDRLDYLCSVGDKETATALATSKYED 489
           + K Y+++ +E ++   +FE+DD E     D  D   S  D E    +  S+ E+
Sbjct: 162 NNKQYENLIQECREHPERFEDDDVEDKDDDDETDDDASDADIEDPEKMVMSESEE 216


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,685,248
Number of Sequences: 37544
Number of extensions: 288264
Number of successful extensions: 640
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 632
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 640
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)