Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40157
         (683 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38087| Best HMM Match : No HMM Matches (HMM E-Value=.)              42   5e-04
SB_48113| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_54416| Best HMM Match : rve (HMM E-Value=1.4e-27)                   29   2.7  
SB_35688| Best HMM Match : COX2_TM (HMM E-Value=8.8)                   28   6.1  
SB_21430| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.1  

>SB_38087| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 107

 Score = 41.9 bits (94), Expect = 5e-04
 Identities = 15/49 (30%), Positives = 32/49 (65%)
 Frame = +1

Query: 241 KGAVMNGIKAGHMAPYYKEVCNDLGWAFDQKLYDDMTKENQDRLSKFEE 387
           K  +++ +KA  MAP+Y+E+C +  W  D+ L + M ++N ++L + ++
Sbjct: 38  KKMLLDVVKAKDMAPFYEELCAEFKWPVDKPLLEKMKQKNTEKLEELDK 86


>SB_48113| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 466

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/72 (25%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
 Frame = +1

Query: 319 AFDQKLYDDMTKENQDRLSKFEEDDSETPVWQDRLDYLCSVGDKETATALATSKYEDSTL 498
           A D  L  +++  ++    +  + + E P WQ  +D LC  G+  T +  + ++++  TL
Sbjct: 260 AKDDGLEQELSVADRRHKREIRQLEEEIPKWQVVVDELCGQGN--TTSGASANEFDLQTL 317

Query: 499 TTNRGSML-YLL 531
              RG ++ YL+
Sbjct: 318 AVLRGRLVRYLM 329


>SB_54416| Best HMM Match : rve (HMM E-Value=1.4e-27)
          Length = 1068

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 16/58 (27%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +1

Query: 325 DQKLYDDMTKENQD-RLSKFEEDDSETPVWQDRLDYLCSVGDKETATALATSKYEDST 495
           D  LY D T E    R  K ++ +++   W+  +D+L  + +    T +    YED T
Sbjct: 771 DPFLYHDDTLELMTHRWIKLDKSENQDAQWKRAIDFLSEIPELHYMTQIVLMLYEDPT 828


>SB_35688| Best HMM Match : COX2_TM (HMM E-Value=8.8)
          Length = 159

 Score = 28.3 bits (60), Expect = 6.1
 Identities = 10/16 (62%), Positives = 14/16 (87%)
 Frame = +2

Query: 578 KAINKAHELVDKGGDW 625
           K I+KA EL+++GGDW
Sbjct: 42  KNISKAKELIEEGGDW 57


>SB_21430| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 815

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = -2

Query: 145 HFQLIVMLLFINVIKVCLEVNFQQIISLLTEQTKNKIK-MHSTSAHKI 5
           HF ++  +  +    VCLE++FQ +I  L +   + +K   + SA++I
Sbjct: 186 HFYILESIALVRSFTVCLELDFQDLILQLFKLFFSVVKYSQNPSAYRI 233


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,372,623
Number of Sequences: 59808
Number of extensions: 344014
Number of successful extensions: 879
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 878
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1769412099
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)