Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40157
         (683 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY052008-1|AAK93432.1|  389|Drosophila melanogaster LD47143p pro...    60   2e-09
AF145308-1|AAF08389.1|  389|Drosophila melanogaster 26S proteaso...    60   2e-09
AE014297-3158|AAF56000.1|  389|Drosophila melanogaster CG5378-PA...    60   2e-09

>AY052008-1|AAK93432.1|  389|Drosophila melanogaster LD47143p
           protein.
          Length = 389

 Score = 60.5 bits (140), Expect = 2e-09
 Identities = 43/161 (26%), Positives = 81/161 (50%), Gaps = 12/161 (7%)
 Frame = +1

Query: 235 SVKGAVMNGIKAGHMAPYYKEVCNDLGWAFDQKLYDDMTKENQDRLSKFEE--DDSETPV 408
           ++K  ++  I+  +MAP+Y+ +C++LGW  D+ L   M + N+  + + +   +D+E  +
Sbjct: 36  ALKAKLLEAIRTENMAPWYEHICSELGWTVDKDLLARMKENNRVEVEQLDAAIEDAEKNL 95

Query: 409 WQ--------DRLDYLCSVGDKETATALATSKYEDSTLTTNRGSMLY-LLCLELL-ISMD 558
            +         + +YLC +GDK  A       YE +    +R  +++ L+ L L  +  D
Sbjct: 96  GEMEVREANLKKSEYLCRIGDKAAAETAFRKTYEKTVSLGHRLDIVFHLIRLGLFYLDHD 155

Query: 559 VM*RNGKSYQ*GSRVSR*RWRLAFRNKLKAYEAIYCLAVRD 681
           ++ RN    +         W    RN+LK Y+ +Y +AVRD
Sbjct: 156 LITRNIDKAKYLIEEGG-DWDR--RNRLKVYQGVYSVAVRD 193


>AF145308-1|AAF08389.1|  389|Drosophila melanogaster 26S proteasome
           regulatory complexsubunit p42A protein.
          Length = 389

 Score = 60.5 bits (140), Expect = 2e-09
 Identities = 43/161 (26%), Positives = 81/161 (50%), Gaps = 12/161 (7%)
 Frame = +1

Query: 235 SVKGAVMNGIKAGHMAPYYKEVCNDLGWAFDQKLYDDMTKENQDRLSKFEE--DDSETPV 408
           ++K  ++  I+  +MAP+Y+ +C++LGW  D+ L   M + N+  + + +   +D+E  +
Sbjct: 36  ALKAKLLEAIRTENMAPWYEHICSELGWTVDKDLLARMKENNRVEVEQLDAAIEDAEKNL 95

Query: 409 WQ--------DRLDYLCSVGDKETATALATSKYEDSTLTTNRGSMLY-LLCLELL-ISMD 558
            +         + +YLC +GDK  A       YE +    +R  +++ L+ L L  +  D
Sbjct: 96  GEMEVREANLKKSEYLCRIGDKAAAETAFRKTYEKTVSLGHRLDIVFHLIRLGLFYLDHD 155

Query: 559 VM*RNGKSYQ*GSRVSR*RWRLAFRNKLKAYEAIYCLAVRD 681
           ++ RN    +         W    RN+LK Y+ +Y +AVRD
Sbjct: 156 LITRNIDKAKYLIEEGG-DWDR--RNRLKVYQGVYSVAVRD 193


>AE014297-3158|AAF56000.1|  389|Drosophila melanogaster CG5378-PA
           protein.
          Length = 389

 Score = 60.5 bits (140), Expect = 2e-09
 Identities = 43/161 (26%), Positives = 81/161 (50%), Gaps = 12/161 (7%)
 Frame = +1

Query: 235 SVKGAVMNGIKAGHMAPYYKEVCNDLGWAFDQKLYDDMTKENQDRLSKFEE--DDSETPV 408
           ++K  ++  I+  +MAP+Y+ +C++LGW  D+ L   M + N+  + + +   +D+E  +
Sbjct: 36  ALKAKLLEAIRTENMAPWYEHICSELGWTVDKDLLARMKENNRVEVEQLDAAIEDAEKNL 95

Query: 409 WQ--------DRLDYLCSVGDKETATALATSKYEDSTLTTNRGSMLY-LLCLELL-ISMD 558
            +         + +YLC +GDK  A       YE +    +R  +++ L+ L L  +  D
Sbjct: 96  GEMEVREANLKKSEYLCRIGDKAAAETAFRKTYEKTVSLGHRLDIVFHLIRLGLFYLDHD 155

Query: 559 VM*RNGKSYQ*GSRVSR*RWRLAFRNKLKAYEAIYCLAVRD 681
           ++ RN    +         W    RN+LK Y+ +Y +AVRD
Sbjct: 156 LITRNIDKAKYLIEEGG-DWDR--RNRLKVYQGVYSVAVRD 193


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,580,186
Number of Sequences: 53049
Number of extensions: 502752
Number of successful extensions: 1500
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1491
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2992560750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)