Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40157
         (683 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68227-6|CAA92512.1|  410|Caenorhabditis elegans Hypothetical pr...    47   1e-05
AC006761-3|AAL32244.2|  860|Caenorhabditis elegans Hypothetical ...    29   4.1  
Z82073-1|CAB04923.1|  444|Caenorhabditis elegans Hypothetical pr...    28   7.1  
Z68507-4|CAA92828.2|  414|Caenorhabditis elegans Hypothetical pr...    27   9.4  

>Z68227-6|CAA92512.1|  410|Caenorhabditis elegans Hypothetical
           protein F49C12.8 protein.
          Length = 410

 Score = 47.2 bits (107), Expect = 1e-05
 Identities = 39/150 (26%), Positives = 67/150 (44%), Gaps = 10/150 (6%)
 Frame = +1

Query: 262 IKAGHMAPYYKEVCNDLGWAFDQKLYDDMTKENQDRLSKF--EEDDSETPVWQD------ 417
           IK   MAP+Y+ VC D     D      M   NQ ++ +   E +D+E  + +       
Sbjct: 59  IKEFDMAPFYELVCADFKIVVDATQLAAMKAANQKKIDEITAEVEDAEKNLGESEVRQGL 118

Query: 418 --RLDYLCSVGDKETATALATSKYEDSTLTTNRGSMLYLLCLELLISMDVM*RNGKSYQ* 591
             + +Y C +GDK+ A    T+ YE +     R  +++ +    L  +D    N K    
Sbjct: 119 LRKFEYYCQIGDKDNALKAYTATYEKTVGMGYRIDVVFAMIRVGLFFLDHHLIN-KFITK 177

Query: 592 GSRVSR*RWRLAFRNKLKAYEAIYCLAVRD 681
              +         +N+L++YEA+Y ++VRD
Sbjct: 178 AKELMEQGGDWERKNRLRSYEALYRMSVRD 207



 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = +2

Query: 572 MGKAINKAHELVDKGGDW 625
           + K I KA EL+++GGDW
Sbjct: 171 INKFITKAKELMEQGGDW 188


>AC006761-3|AAL32244.2|  860|Caenorhabditis elegans Hypothetical
           protein Y41G9A.4b protein.
          Length = 860

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/47 (31%), Positives = 24/47 (51%)
 Frame = +1

Query: 325 DQKLYDDMTKENQDRLSKFEEDDSETPVWQDRLDYLCSVGDKETATA 465
           DQK YD + KEN+    + EE + +    ++RL+ L    + E   A
Sbjct: 754 DQKRYDMLKKENETLQIQIEEKERKIHECKERLEELTKNSETEDMNA 800


>Z82073-1|CAB04923.1|  444|Caenorhabditis elegans Hypothetical
           protein W06D12.2 protein.
          Length = 444

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 14/43 (32%), Positives = 24/43 (55%)
 Frame = -2

Query: 136 LIVMLLFINVIKVCLEVNFQQIISLLTEQTKNKIKMHSTSAHK 8
           L V+ + INVI++ LE  F QI+  +    KN + + +  + K
Sbjct: 289 LSVVSMCINVIQMQLEFIFNQIVQRIENDFKNTLSVAAEESRK 331


>Z68507-4|CAA92828.2|  414|Caenorhabditis elegans Hypothetical
           protein M18.6 protein.
          Length = 414

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +1

Query: 313 GWAFDQKLYDDMTKENQDRLSKFEEDDSE 399
           G  F  +L +  T+EN D + +F+ DD E
Sbjct: 371 GITFQNELQEGDTEENWDHVPEFDNDDQE 399


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,954,016
Number of Sequences: 27780
Number of extensions: 271645
Number of successful extensions: 764
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 752
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 761
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)