Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40157
         (683 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g24820.2 68417.m03556 26S proteasome regulatory subunit, puta...    39   0.004
At4g24820.1 68417.m03555 26S proteasome regulatory subunit, puta...    39   0.004
At4g20270.1 68417.m02961 leucine-rich repeat transmembrane prote...    29   2.9  
At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast, ...    27   8.8  
At1g50510.1 68414.m05665 indigoidine synthase A family protein s...    27   8.8  

>At4g24820.2 68417.m03556 26S proteasome regulatory subunit,
           putative (RPN7) contains similarity to ubiquitin
           activating enzyme GI:3647283 from [Lycopersicon
           esculentum]
          Length = 387

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 36/158 (22%), Positives = 64/158 (40%), Gaps = 10/158 (6%)
 Frame = +1

Query: 238 VKGAVMNGIKAGHMAPYYKEVCNDLGWAFDQKLYDDMTKENQDRLSKFEED--DSETPVW 411
           +K  V++ I++  MAP Y+ +        DQ L + M   N++ L K +E   D+E  + 
Sbjct: 35  LKSEVLDFIRSHGMAPLYETLIASSVLDLDQSLLESMRAANEEELKKLDEKIADAEENLG 94

Query: 412 QDRLD--------YLCSVGDKETATALATSKYEDSTLTTNRGSMLYLLCLELLISMDVM* 567
           +  +         Y   + DKE A        E  T+   +   +    L+L        
Sbjct: 95  ESEVREAHLAKALYFIRISDKEKALE-QLKLTEGKTVAVGQKMDVVFYTLQLAFFYMDFD 153

Query: 568 RNGKSYQ*GSRVSR*RWRLAFRNKLKAYEAIYCLAVRD 681
              KS     ++         +N+LK YE +YC++ R+
Sbjct: 154 LVSKSIDKAKKLFEEGGDWERKNRLKVYEGLYCMSTRN 191


>At4g24820.1 68417.m03555 26S proteasome regulatory subunit,
           putative (RPN7) contains similarity to ubiquitin
           activating enzyme GI:3647283 from [Lycopersicon
           esculentum]
          Length = 387

 Score = 38.7 bits (86), Expect = 0.004
 Identities = 36/158 (22%), Positives = 64/158 (40%), Gaps = 10/158 (6%)
 Frame = +1

Query: 238 VKGAVMNGIKAGHMAPYYKEVCNDLGWAFDQKLYDDMTKENQDRLSKFEED--DSETPVW 411
           +K  V++ I++  MAP Y+ +        DQ L + M   N++ L K +E   D+E  + 
Sbjct: 35  LKSEVLDFIRSHGMAPLYETLIASSVLDLDQSLLESMRAANEEELKKLDEKIADAEENLG 94

Query: 412 QDRLD--------YLCSVGDKETATALATSKYEDSTLTTNRGSMLYLLCLELLISMDVM* 567
           +  +         Y   + DKE A        E  T+   +   +    L+L        
Sbjct: 95  ESEVREAHLAKALYFIRISDKEKALE-QLKLTEGKTVAVGQKMDVVFYTLQLAFFYMDFD 153

Query: 568 RNGKSYQ*GSRVSR*RWRLAFRNKLKAYEAIYCLAVRD 681
              KS     ++         +N+LK YE +YC++ R+
Sbjct: 154 LVSKSIDKAKKLFEEGGDWERKNRLKVYEGLYCMSTRN 191


>At4g20270.1 68417.m02961 leucine-rich repeat transmembrane protein
           kinase, putative CLAVATA1 receptor kinase, Arabidopsis
           th., PATX:G2160756
          Length = 992

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 15/57 (26%), Positives = 27/57 (47%)
 Frame = +3

Query: 30  ILILFLVCSVRSDIIC*KFTSKQTLITLINRSITIN*KWSYQRREKHLNTWHWPESN 200
           I   FL+ S  S ++C    S   L  +   ++ I+ K S+   +  L++W+ P  N
Sbjct: 5   IFTFFLILSSISPLLCSSLISPLNLSLIRQANVLISLKQSFDSYDPSLDSWNIPNFN 61


>At2g35410.1 68415.m04340 33 kDa ribonucleoprotein, chloroplast,
           putative / RNA-binding protein cp33, putative similar to
           SP|P19684 33 kDa ribonucleoprotein, chloroplast
           precursor {Nicotiana sylvestris}; contains InterPro
           entry IPR000504: RNA-binding region RNP-1 (RNA
           recognition motif) (RRM)
          Length = 308

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 17/44 (38%), Positives = 21/44 (47%)
 Frame = +1

Query: 430 LCSVGDKETATALATSKYEDSTLTTNRGSMLYLLCLELLISMDV 561
           LCSV +KET+    TS+ E +  T N      L    L  SM V
Sbjct: 65  LCSVAEKETSADEETSQEEKTEETQNSNLKRKLFVFNLPWSMSV 108


>At1g50510.1 68414.m05665 indigoidine synthase A family protein
           similar to IndA protein (GI:7576263) [Erwinia
           chrysanthemi]; contains Pfam profile PF04227:
           Indigoidine synthase A like protein
          Length = 330

 Score = 27.5 bits (58), Expect = 8.8
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = +2

Query: 125 HYNQLKMELSAEGKTPEYMALAGIKFKLSLPEFKDNIQLKE 247
           H   +  +L+A G+TP  +  AG+K  L +P+  + ++ +E
Sbjct: 161 HSMDISSDLTALGRTPIAVISAGVKSILDIPKTLEYLETQE 201


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,030,442
Number of Sequences: 28952
Number of extensions: 247641
Number of successful extensions: 648
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 633
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 646
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1447936096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)