Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40154
(749 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC57A10.09c |||High-mobility group non-histone chromatin prote... 48 1e-06
SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr 1|... 29 0.94
SPAC4G9.11c |cmb1||cytosine-mismatch binding protein 1|Schizosac... 28 1.6
SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase Pik3|Schizo... 27 2.2
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 27 2.2
SPAC12B10.04 |||tubulin-tyrosine ligase |Schizosaccharomyces pom... 27 2.2
SPAC4G9.06c |||histone chaperone Chz1 |Schizosaccharomyces pombe... 27 2.2
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 27 2.9
SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyc... 26 5.0
SPCP1E11.04c |pal1||membrane associated protein Pal1 |Schizosacc... 26 6.6
SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces pombe... 25 8.7
SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo... 25 8.7
>SPAC57A10.09c |||High-mobility group non-histone chromatin
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 108
Score = 48.4 bits (110), Expect = 1e-06
Identities = 23/79 (29%), Positives = 37/79 (46%)
Frame = -3
Query: 315 AKEAADERP*CTKALAISILLFCNDERSKVKAGNPEYTMGDIAKELGRRWAAADPETKAK 136
AK + + P K + + F + R K+K NP+ T G + LG+RW +
Sbjct: 5 AKSSRKKDPNTPKRNMSAFMFFSIENREKMKTDNPDATFGQLGSLLGKRWKELTSTEREP 64
Query: 135 XDALSEKDKARYDREMTAY 79
+ + +DK RY+RE Y
Sbjct: 65 YEEKARQDKERYERERKEY 83
Score = 38.7 bits (86), Expect = 9e-04
Identities = 18/68 (26%), Positives = 32/68 (47%)
Frame = -1
Query: 548 RSHDSLCILCADVREEHKKKYPDVSVIFAAFSKKCAERWNTMSEKEKQRFHEMAEQDKHR 369
R+ + + RE+ K PD + F +RW ++ E++ + E A QDK R
Sbjct: 18 RNMSAFMFFSIENREKMKTDNPDAT--FGQLGSLLGKRWKELTSTEREPYEEKARQDKER 75
Query: 368 FDLEMQNY 345
++ E + Y
Sbjct: 76 YERERKEY 83
Score = 35.1 bits (77), Expect = 0.011
Identities = 24/73 (32%), Positives = 36/73 (49%)
Frame = -1
Query: 320 RGRKRQQMKDPNAPKRSLSAFFCFATMNVRR*KLATQSTPWAILRRNSADVGRPLIRRLR 141
R K + KDPN PKR++SAF F+ N R K+ T + P A + + +G+
Sbjct: 3 RAAKSSRKKDPNTPKRNMSAFMFFSIEN--REKMKTDN-PDATFGQLGSLLGKRWKELTS 59
Query: 140 LNXTRYLKKTRRD 102
Y +K R+D
Sbjct: 60 TEREPYEEKARQD 72
>SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 341
Score = 28.7 bits (61), Expect = 0.94
Identities = 12/33 (36%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Frame = -1
Query: 461 AFSKKCAERWNTMSEKEKQRFHE--MAEQDKHR 369
A K + WN ++E+EK+ +HE +A ++K R
Sbjct: 224 ALKKTLEDTWNNLTEEEKKPYHEGLLAAREKAR 256
>SPAC4G9.11c |cmb1||cytosine-mismatch binding protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 223
Score = 27.9 bits (59), Expect = 1.6
Identities = 15/57 (26%), Positives = 28/57 (49%)
Frame = -1
Query: 419 EKEKQRFHEMAEQDKHRFDLEMQNYVPPKDMKVRGRKRQQMKDPNAPKRSLSAFFCF 249
+ EK+RF E +++ +N K+ G + +++ P+ PK+ SAF F
Sbjct: 102 DAEKKRFMETLRSFTPT-EIDSENRRRSKEAHSTGSRYYRLRHPDVPKKPSSAFILF 157
>SPAC458.05 |pik3|vps34|phosphatidylinositol 3-kinase
Pik3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 801
Score = 27.5 bits (58), Expect = 2.2
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = +3
Query: 312 SPSDLHVLWWYIVLHLQVESMLVLFSHLM 398
SPS + L+WY+V+ ++ E + LFS +M
Sbjct: 405 SPSIGNDLYWYLVVEIEDEPVSKLFSSVM 433
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 27.5 bits (58), Expect = 2.2
Identities = 20/90 (22%), Positives = 43/90 (47%)
Frame = -1
Query: 545 SHDSLCILCADVREEHKKKYPDVSVIFAAFSKKCAERWNTMSEKEKQRFHEMAEQDKHRF 366
+ D+L +C D+ + +K S + F K AER +++K +Q+ +MA+ +++
Sbjct: 478 TQDTLNEVCTDIIHLYHQKLDYYSGNYDTFLKVRAERDVQLAKKARQQEKDMAKL-QNKL 536
Query: 365 DLEMQNYVPPKDMKVRGRKRQQMKDPNAPK 276
++ KV+ ++ KD + K
Sbjct: 537 NMTGSEQQKKAKAKVKAMNKKLEKDKQSGK 566
>SPAC12B10.04 |||tubulin-tyrosine ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 403
Score = 27.5 bits (58), Expect = 2.2
Identities = 10/30 (33%), Positives = 18/30 (60%)
Frame = -1
Query: 527 ILCADVREEHKKKYPDVSVIFAAFSKKCAE 438
+LC R+++KK PD ++F+ S C +
Sbjct: 244 MLCLLARDKYKKPTPDPDLLFSHLSNTCLQ 273
>SPAC4G9.06c |||histone chaperone Chz1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 113
Score = 27.5 bits (58), Expect = 2.2
Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Frame = -1
Query: 581 DAPFKAIQQAPRSHDSLCILCADVREEHKKKYPDVSVIFAAFSKKCAERWNTMSEKEKQR 402
D F+ + + S DS + D + H ++ D S I + C+ R + ++K
Sbjct: 30 DVDFQDLSSSGESDDSDDSMQEDYDDIHDEEPEDYSAIDPT-NIMCSTR----TRRKKID 84
Query: 401 FHEMAE--QDKHRFDLEMQNYVPPKD 330
F ++ E Q++ F+ E ++Y+PP+D
Sbjct: 85 FTKVLEEGQNEDDFEEEDEDYIPPQD 110
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 27.1 bits (57), Expect = 2.9
Identities = 14/47 (29%), Positives = 24/47 (51%)
Frame = -1
Query: 398 HEMAEQDKHRFDLEMQNYVPPKDMKVRGRKRQQMKDPNAPKRSLSAF 258
+EM + DK DLE +Y KD + + + N PKR+++ +
Sbjct: 1317 NEMEDLDKME-DLEKPDYAEEKDPYITVMSELRSRIQNVPKRTVTVY 1362
>SPBC12C2.06 |||ATP-dependent RNA helicase Dbp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 503
Score = 26.2 bits (55), Expect = 5.0
Identities = 18/82 (21%), Positives = 37/82 (45%)
Frame = -1
Query: 503 EHKKKYPDVSVIFAAFSKKCAERWNTMSEKEKQRFHEMAEQDKHRFDLEMQNYVPPKDMK 324
E+K + + + K E + SE++K + + + + + N +P K+ +
Sbjct: 36 ENKNEDQKATNLSDRLGPKITENVDAKSEQDKATNTIAEDANTKQSENDESNLIPNKN-E 94
Query: 323 VRGRKRQQMKDPNAPKRSLSAF 258
VR + DPN+P S+ +F
Sbjct: 95 VRVKLADLQADPNSPLFSVKSF 116
>SPCP1E11.04c |pal1||membrane associated protein Pal1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 425
Score = 25.8 bits (54), Expect = 6.6
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +3
Query: 159 RPPNVCRVPSQYRPWCTLGCQLSPSN 236
R PN PS YR ++G + SP N
Sbjct: 317 RTPNTLNRPSNYRSHSSMGTRRSPLN 342
>SPBC3B8.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 511
Score = 25.4 bits (53), Expect = 8.7
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Frame = -1
Query: 203 PWAILRRNSADVGRPLIRRLRLNXTRYL--KKTRRDM 99
P L+RNS D G PL+ R + YL + +RRD+
Sbjct: 139 PEQALQRNSLDDGAPLLPREGNSSDEYLPPQSSRRDV 175
>SPBC32C12.02 |ste11|aff1, stex|transcription factor
Ste11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 468
Score = 25.4 bits (53), Expect = 8.7
Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = -1
Query: 461 AFSKKCAERWNTMSEKEKQRFHEMA--EQDKHRFDLEMQNYVPPKDMKVRGRKRQ 303
+ S+ + W S + K+ + +++ E+ KH + Y P K VR R ++
Sbjct: 41 SISRIIGQLWRNESAQVKKYYSDLSALERQKHMLENPEYKYTPKKRSTVRRRHKK 95
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,905,189
Number of Sequences: 5004
Number of extensions: 58662
Number of successful extensions: 210
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 210
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 357280532
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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