Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40154
(749 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U22831-3|AAK67237.1| 234|Caenorhabditis elegans Hmg protein 1.2... 90 1e-18
U22831-2|AAK67238.1| 233|Caenorhabditis elegans Hmg protein 1.2... 90 1e-18
U22831-1|AAK20071.1| 235|Caenorhabditis elegans Hmg protein 1.2... 90 1e-18
AF056577-1|AAC78599.1| 235|Caenorhabditis elegans high mobility... 90 1e-18
AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3... 48 9e-06
U10401-6|AAA19061.1| 697|Caenorhabditis elegans Hmg protein 4 p... 46 2e-05
U37532-1|AAC05308.1| 438|Caenorhabditis elegans HMG-box protein... 39 0.004
AF043703-1|AAK21504.1| 437|Caenorhabditis elegans Posterior pha... 39 0.004
U80032-3|AAM15556.1| 404|Caenorhabditis elegans Sox (mammalian ... 36 0.023
AL110490-14|CAB54448.2| 95|Caenorhabditis elegans Hypothetical... 35 0.054
AF056576-1|AAC78598.1| 95|Caenorhabditis elegans high mobility... 35 0.054
Z70780-13|CAD18872.2| 368|Caenorhabditis elegans Hypothetical p... 32 0.38
Z70780-12|CAA94820.2| 329|Caenorhabditis elegans Hypothetical p... 32 0.38
U64608-9|AAX88815.1| 319|Caenorhabditis elegans Egg laying defe... 31 0.87
U64608-8|AAO91671.1| 316|Caenorhabditis elegans Egg laying defe... 31 0.87
U64608-7|AAX88814.1| 422|Caenorhabditis elegans Egg laying defe... 31 0.87
U64608-6|AAB04597.2| 470|Caenorhabditis elegans Egg laying defe... 31 0.87
AF097319-1|AAD12252.1| 470|Caenorhabditis elegans Sox domain pr... 31 0.87
AF099003-3|ABA00149.1| 759|Caenorhabditis elegans Hypothetical ... 29 2.7
AF036689-3|AAB88322.2| 557|Caenorhabditis elegans Hypothetical ... 29 2.7
Z81089-3|CAB03137.1| 275|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical pr... 29 3.5
Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical p... 29 3.5
Z72503-5|CAI79155.1| 513|Caenorhabditis elegans Hypothetical pr... 29 3.5
U80447-4|AAB37808.1| 560|Caenorhabditis elegans Temporarily ass... 29 4.7
DQ645890-1|ABG34266.1| 560|Caenorhabditis elegans CIR-1 protein. 29 4.7
AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal elemen... 29 4.7
AC024211-1|AAF36065.1| 252|Caenorhabditis elegans Hypothetical ... 28 6.2
>U22831-3|AAK67237.1| 234|Caenorhabditis elegans Hmg protein 1.2,
isoform b protein.
Length = 234
Score = 90.2 bits (214), Expect = 1e-18
Identities = 42/87 (48%), Positives = 61/87 (70%)
Frame = -1
Query: 506 EEHKKKYPDVSVIFAAFSKKCAERWNTMSEKEKQRFHEMAEQDKHRFDLEMQNYVPPKDM 327
EEHKKKYP+ +V SKKC+E+W TM + EK+RF+E+A++D R+ E+ +
Sbjct: 60 EEHKKKYPNENVQVTEISKKCSEKWKTMVDDEKRRFYELAQKDAERYQAEVSVAAYGGED 119
Query: 326 KVRGRKRQQMKDPNAPKRSLSAFFCFA 246
+R RKR + KDP+APKR+LSAFF ++
Sbjct: 120 AMRKRKRAK-KDPHAPKRALSAFFFYS 145
Score = 62.1 bits (144), Expect = 4e-10
Identities = 27/86 (31%), Positives = 47/86 (54%)
Frame = -3
Query: 333 GHEGQRAKEAADERP*CTKALAISILLFCNDERSKVKAGNPEYTMGDIAKELGRRWAAAD 154
G + R ++ A + P K + + D+R +++AG+P++ +G +A+ELG+ W
Sbjct: 117 GEDAMRKRKRAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVP 176
Query: 153 PETKAKXDALSEKDKARYDREMTAYK 76
ETK + ++ DK RY EM YK
Sbjct: 177 QETKDMYEQKAQADKDRYADEMRNYK 202
Score = 31.1 bits (67), Expect = 0.87
Identities = 16/60 (26%), Positives = 28/60 (46%)
Frame = -3
Query: 249 CNDERSKVKAGNPEYTMGDIAKELGRRWAAADPETKAKXDALSEKDKARYDREMTAYKKG 70
C +E K K N + +I+K+ +W + K + L++KD RY E++ G
Sbjct: 58 CYEEHKK-KYPNENVQVTEISKKCSEKWKTMVDDEKRRFYELAQKDAERYQAEVSVAAYG 116
>U22831-2|AAK67238.1| 233|Caenorhabditis elegans Hmg protein 1.2,
isoform c protein.
Length = 233
Score = 90.2 bits (214), Expect = 1e-18
Identities = 42/87 (48%), Positives = 60/87 (68%)
Frame = -1
Query: 506 EEHKKKYPDVSVIFAAFSKKCAERWNTMSEKEKQRFHEMAEQDKHRFDLEMQNYVPPKDM 327
EEHKKKYP+ +V SKKC+E+W TM + EK+RF+E+A++D R+ E+ Y M
Sbjct: 61 EEHKKKYPNENVQVTEISKKCSEKWKTMVDDEKRRFYELAQKDAERYQAEVAAYGGEDAM 120
Query: 326 KVRGRKRQQMKDPNAPKRSLSAFFCFA 246
+ R R + KDP+APKR+LSAFF ++
Sbjct: 121 RKRKRAK---KDPHAPKRALSAFFFYS 144
Score = 64.5 bits (150), Expect = 8e-11
Identities = 29/93 (31%), Positives = 50/93 (53%)
Frame = -3
Query: 354 AELCTTKGHEGQRAKEAADERP*CTKALAISILLFCNDERSKVKAGNPEYTMGDIAKELG 175
AE+ G + R ++ A + P K + + D+R +++AG+P++ +G +A+ELG
Sbjct: 109 AEVAAYGGEDAMRKRKRAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELG 168
Query: 174 RRWAAADPETKAKXDALSEKDKARYDREMTAYK 76
+ W ETK + ++ DK RY EM YK
Sbjct: 169 KMWKLVPQETKDMYEQKAQADKDRYADEMRNYK 201
Score = 34.7 bits (76), Expect = 0.071
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = -3
Query: 249 CNDERSKVKAGNPEYTMGDIAKELGRRWAAADPETKAKXDALSEKDKARYDREMTAY 79
C +E K K N + +I+K+ +W + K + L++KD RY E+ AY
Sbjct: 59 CYEEHKK-KYPNENVQVTEISKKCSEKWKTMVDDEKRRFYELAQKDAERYQAEVAAY 114
>U22831-1|AAK20071.1| 235|Caenorhabditis elegans Hmg protein 1.2,
isoform a protein.
Length = 235
Score = 90.2 bits (214), Expect = 1e-18
Identities = 42/87 (48%), Positives = 61/87 (70%)
Frame = -1
Query: 506 EEHKKKYPDVSVIFAAFSKKCAERWNTMSEKEKQRFHEMAEQDKHRFDLEMQNYVPPKDM 327
EEHKKKYP+ +V SKKC+E+W TM + EK+RF+E+A++D R+ E+ +
Sbjct: 61 EEHKKKYPNENVQVTEISKKCSEKWKTMVDDEKRRFYELAQKDAERYQAEVSVAAYGGED 120
Query: 326 KVRGRKRQQMKDPNAPKRSLSAFFCFA 246
+R RKR + KDP+APKR+LSAFF ++
Sbjct: 121 AMRKRKRAK-KDPHAPKRALSAFFFYS 146
Score = 62.1 bits (144), Expect = 4e-10
Identities = 27/86 (31%), Positives = 47/86 (54%)
Frame = -3
Query: 333 GHEGQRAKEAADERP*CTKALAISILLFCNDERSKVKAGNPEYTMGDIAKELGRRWAAAD 154
G + R ++ A + P K + + D+R +++AG+P++ +G +A+ELG+ W
Sbjct: 118 GEDAMRKRKRAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVP 177
Query: 153 PETKAKXDALSEKDKARYDREMTAYK 76
ETK + ++ DK RY EM YK
Sbjct: 178 QETKDMYEQKAQADKDRYADEMRNYK 203
Score = 31.1 bits (67), Expect = 0.87
Identities = 16/60 (26%), Positives = 28/60 (46%)
Frame = -3
Query: 249 CNDERSKVKAGNPEYTMGDIAKELGRRWAAADPETKAKXDALSEKDKARYDREMTAYKKG 70
C +E K K N + +I+K+ +W + K + L++KD RY E++ G
Sbjct: 59 CYEEHKK-KYPNENVQVTEISKKCSEKWKTMVDDEKRRFYELAQKDAERYQAEVSVAAYG 117
>AF056577-1|AAC78599.1| 235|Caenorhabditis elegans high mobility
group protein 1.2 protein.
Length = 235
Score = 90.2 bits (214), Expect = 1e-18
Identities = 42/87 (48%), Positives = 61/87 (70%)
Frame = -1
Query: 506 EEHKKKYPDVSVIFAAFSKKCAERWNTMSEKEKQRFHEMAEQDKHRFDLEMQNYVPPKDM 327
EEHKKKYP+ +V SKKC+E+W TM + EK+RF+E+A++D R+ E+ +
Sbjct: 61 EEHKKKYPNENVQVTEISKKCSEKWKTMVDDEKRRFYELAQKDAERYQAEVSVAAYGGED 120
Query: 326 KVRGRKRQQMKDPNAPKRSLSAFFCFA 246
+R RKR + KDP+APKR+LSAFF ++
Sbjct: 121 AMRKRKRAK-KDPHAPKRALSAFFFYS 146
Score = 62.1 bits (144), Expect = 4e-10
Identities = 27/86 (31%), Positives = 47/86 (54%)
Frame = -3
Query: 333 GHEGQRAKEAADERP*CTKALAISILLFCNDERSKVKAGNPEYTMGDIAKELGRRWAAAD 154
G + R ++ A + P K + + D+R +++AG+P++ +G +A+ELG+ W
Sbjct: 118 GEDAMRKRKRAKKDPHAPKRALSAFFFYSQDKRPEIQAGHPDWKVGQVAQELGKMWKLVP 177
Query: 153 PETKAKXDALSEKDKARYDREMTAYK 76
ETK + ++ DK RY EM YK
Sbjct: 178 QETKDMYEQKAQADKDRYADEMRNYK 203
Score = 31.1 bits (67), Expect = 0.87
Identities = 16/60 (26%), Positives = 28/60 (46%)
Frame = -3
Query: 249 CNDERSKVKAGNPEYTMGDIAKELGRRWAAADPETKAKXDALSEKDKARYDREMTAYKKG 70
C +E K K N + +I+K+ +W + K + L++KD RY E++ G
Sbjct: 59 CYEEHKK-KYPNENVQVTEISKKCSEKWKTMVDDEKRRFYELAQKDAERYQAEVSVAAYG 117
>AF000195-3|AAC24268.1| 689|Caenorhabditis elegans Hmg protein 3
protein.
Length = 689
Score = 47.6 bits (108), Expect = 9e-06
Identities = 22/69 (31%), Positives = 39/69 (56%)
Frame = -3
Query: 279 KALAISILLFCNDERSKVKAGNPEYTMGDIAKELGRRWAAADPETKAKXDALSEKDKARY 100
K + +++ N R+ +K T+GD+AK+ G +W + + K + + + +DKARY
Sbjct: 562 KRATTAYIIWFNANRNSMKEDGD--TLGDVAKKAGAKWKSMSADDKKEWNDKAAQDKARY 619
Query: 99 DREMTAYKK 73
+ EM YKK
Sbjct: 620 EAEMKEYKK 628
Score = 38.7 bits (86), Expect = 0.004
Identities = 14/37 (37%), Positives = 25/37 (67%)
Frame = -1
Query: 455 SKKCAERWNTMSEKEKQRFHEMAEQDKHRFDLEMQNY 345
+KK +W +MS +K+ +++ A QDK R++ EM+ Y
Sbjct: 590 AKKAGAKWKSMSADDKKEWNDKAAQDKARYEAEMKEY 626
Score = 30.7 bits (66), Expect = 1.2
Identities = 15/62 (24%), Positives = 32/62 (51%)
Frame = -1
Query: 422 SEKEKQRFHEMAEQDKHRFDLEMQNYVPPKDMKVRGRKRQQMKDPNAPKRSLSAFFCFAT 243
S+ +++ ++ K + + + P K+ V+ K ++ KDPN PKR+ +A+ +
Sbjct: 516 SDPDEENIEPKKKESKEKKNKREKKEKPVKEKAVK--KGKKTKDPNEPKRATTAYIIWFN 573
Query: 242 MN 237
N
Sbjct: 574 AN 575
>U10401-6|AAA19061.1| 697|Caenorhabditis elegans Hmg protein 4
protein.
Length = 697
Score = 46.4 bits (105), Expect = 2e-05
Identities = 26/88 (29%), Positives = 49/88 (55%), Gaps = 1/88 (1%)
Frame = -3
Query: 327 EGQRAKEAADERP*CTKALAISILLFCNDERSKVKAGNPEYTMGDIAKELGRRWAAADPE 148
EG++ K+ D+ P K + + + R+++K ++ D+AK+ G +W +
Sbjct: 543 EGKKGKK--DKDPNAPKRATSAYMQWFLASRNELKEDGD--SVADVAKKGGAKWKTMSSD 598
Query: 147 TKAKXDALSEKDKARYDREMTAYKK-GP 67
K K + +E+DK+RY++EM Y+K GP
Sbjct: 599 DKKKWEEKAEEDKSRYEKEMKEYRKNGP 626
Score = 42.7 bits (96), Expect = 3e-04
Identities = 17/40 (42%), Positives = 27/40 (67%)
Frame = -1
Query: 464 AAFSKKCAERWNTMSEKEKQRFHEMAEQDKHRFDLEMQNY 345
A +KK +W TMS +K+++ E AE+DK R++ EM+ Y
Sbjct: 582 ADVAKKGGAKWKTMSSDDKKKWEEKAEEDKSRYEKEMKEY 621
Score = 32.3 bits (70), Expect = 0.38
Identities = 14/26 (53%), Positives = 19/26 (73%)
Frame = -1
Query: 335 KDMKVRGRKRQQMKDPNAPKRSLSAF 258
K K G+K ++ KDPNAPKR+ SA+
Sbjct: 538 KREKKEGKKGKKDKDPNAPKRATSAY 563
>U37532-1|AAC05308.1| 438|Caenorhabditis elegans HMG-box protein
protein.
Length = 438
Score = 38.7 bits (86), Expect = 0.004
Identities = 18/77 (23%), Positives = 39/77 (50%)
Frame = -1
Query: 464 AAFSKKCAERWNTMSEKEKQRFHEMAEQDKHRFDLEMQNYVPPKDMKVRGRKRQQMKDPN 285
A +K+ +RW+ +S++E+ ++ EMA++DK + ++ V +K ++ +D +
Sbjct: 222 AELNKELGKRWHDLSKEEQAKYFEMAKKDKETHKERYPEWSARENYAVNKKKTKKRRDKS 281
Query: 284 APKRSLSAFFCFATMNV 234
P + C A V
Sbjct: 282 IPSENNDQKKCRARFGV 298
Score = 33.9 bits (74), Expect = 0.12
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = -3
Query: 219 GNPEYTMGDIAKELGRRWAAADPETKAKXDALSEKDK 109
GN E ++ KELG+RW E +AK +++KDK
Sbjct: 215 GNNEKQSAELNKELGKRWHDLSKEEQAKYFEMAKKDK 251
>AF043703-1|AAK21504.1| 437|Caenorhabditis elegans Posterior
pharynx defect protein 1 protein.
Length = 437
Score = 38.7 bits (86), Expect = 0.004
Identities = 18/77 (23%), Positives = 39/77 (50%)
Frame = -1
Query: 464 AAFSKKCAERWNTMSEKEKQRFHEMAEQDKHRFDLEMQNYVPPKDMKVRGRKRQQMKDPN 285
A +K+ +RW+ +S++E+ ++ EMA++DK + ++ V +K ++ +D +
Sbjct: 221 AELNKELGKRWHDLSKEEQAKYFEMAKKDKETHKERYPEWSARENYAVNKKKTKKRRDKS 280
Query: 284 APKRSLSAFFCFATMNV 234
P + C A V
Sbjct: 281 IPSENNDQKKCRARFGV 297
Score = 33.9 bits (74), Expect = 0.12
Identities = 15/37 (40%), Positives = 22/37 (59%)
Frame = -3
Query: 219 GNPEYTMGDIAKELGRRWAAADPETKAKXDALSEKDK 109
GN E ++ KELG+RW E +AK +++KDK
Sbjct: 214 GNNEKQSAELNKELGKRWHDLSKEEQAKYFEMAKKDK 250
>U80032-3|AAM15556.1| 404|Caenorhabditis elegans Sox (mammalian sry
box) familyprotein 1 protein.
Length = 404
Score = 36.3 bits (80), Expect = 0.023
Identities = 19/66 (28%), Positives = 34/66 (51%)
Frame = -3
Query: 264 SILLFCNDERSKVKAGNPEYTMGDIAKELGRRWAAADPETKAKXDALSEKDKARYDREMT 85
+ +++ ER K+ P+ +I+K+LG RW + E KA A +E+ + + +E
Sbjct: 99 AFMVWSQMERRKICEHQPDMHNAEISKQLGSRWRSLTDEEKAPFVAEAERLRVCHMQEYP 158
Query: 84 AYKKGP 67
YK P
Sbjct: 159 DYKYKP 164
>AL110490-14|CAB54448.2| 95|Caenorhabditis elegans Hypothetical
protein Y48B6A.14 protein.
Length = 95
Score = 35.1 bits (77), Expect = 0.054
Identities = 17/33 (51%), Positives = 22/33 (66%)
Frame = -1
Query: 320 RGRKRQQMKDPNAPKRSLSAFFCFATMNVRR*K 222
R +K + KDPNAPKR++SAFF + N R K
Sbjct: 15 RVKKGGKAKDPNAPKRAMSAFFFWMQENRERIK 47
Score = 31.5 bits (68), Expect = 0.66
Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Frame = -3
Query: 321 QRAKEAADER-P*CTKALAISILLFCNDERSKVKAGNPEYTMGDIAKELGRRWAAADPET 145
+R K+ + P K + + + R ++K P + D+AK G W
Sbjct: 14 KRVKKGGKAKDPNAPKRAMSAFFFWMQENRERIK--KPGMGVADVAKAAGVEWGKLTD-- 69
Query: 144 KAKXDALSEKDKARYDREMTAYKK 73
K++ + + DK RY+ ++ YKK
Sbjct: 70 KSRWEKKAADDKKRYEVDIANYKK 93
>AF056576-1|AAC78598.1| 95|Caenorhabditis elegans high mobility
group protein 1.1 protein.
Length = 95
Score = 35.1 bits (77), Expect = 0.054
Identities = 17/33 (51%), Positives = 22/33 (66%)
Frame = -1
Query: 320 RGRKRQQMKDPNAPKRSLSAFFCFATMNVRR*K 222
R +K + KDPNAPKR++SAFF + N R K
Sbjct: 15 RVKKGGKAKDPNAPKRAMSAFFFWMQENRERIK 47
Score = 31.5 bits (68), Expect = 0.66
Identities = 20/84 (23%), Positives = 37/84 (44%), Gaps = 1/84 (1%)
Frame = -3
Query: 321 QRAKEAADER-P*CTKALAISILLFCNDERSKVKAGNPEYTMGDIAKELGRRWAAADPET 145
+R K+ + P K + + + R ++K P + D+AK G W
Sbjct: 14 KRVKKGGKAKDPNAPKRAMSAFFFWMQENRERIK--KPGMGVADVAKAAGVEWGKLTD-- 69
Query: 144 KAKXDALSEKDKARYDREMTAYKK 73
K++ + + DK RY+ ++ YKK
Sbjct: 70 KSRWEKKAADDKKRYEVDIANYKK 93
>Z70780-13|CAD18872.2| 368|Caenorhabditis elegans Hypothetical
protein F46B6.3b protein.
Length = 368
Score = 32.3 bits (70), Expect = 0.38
Identities = 18/64 (28%), Positives = 32/64 (50%)
Frame = -1
Query: 464 AAFSKKCAERWNTMSEKEKQRFHEMAEQDKHRFDLEMQNYVPPKDMKVRGRKRQQMKDPN 285
A SKK ++ M+EKEK+R+ + + K R + Q ++ K K R++ + P
Sbjct: 222 ATTSKKDLKKEKPMTEKEKERWEKQDAKRKERNMIRKQKFLDEKKKKHEEREQDGPRVPR 281
Query: 284 APKR 273
K+
Sbjct: 282 DKKK 285
>Z70780-12|CAA94820.2| 329|Caenorhabditis elegans Hypothetical
protein F46B6.3a protein.
Length = 329
Score = 32.3 bits (70), Expect = 0.38
Identities = 18/64 (28%), Positives = 32/64 (50%)
Frame = -1
Query: 464 AAFSKKCAERWNTMSEKEKQRFHEMAEQDKHRFDLEMQNYVPPKDMKVRGRKRQQMKDPN 285
A SKK ++ M+EKEK+R+ + + K R + Q ++ K K R++ + P
Sbjct: 222 ATTSKKDLKKEKPMTEKEKERWEKQDAKRKERNMIRKQKFLDEKKKKHEEREQDGPRVPR 281
Query: 284 APKR 273
K+
Sbjct: 282 DKKK 285
>U64608-9|AAX88815.1| 319|Caenorhabditis elegans Egg laying
defective protein 13,isoform d protein.
Length = 319
Score = 31.1 bits (67), Expect = 0.87
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = -1
Query: 569 KAIQQAPRSHDSLCILCADVREEHKKKYPDVSVIFAAFSKKCAERWNTMSEKEKQRFHE 393
K+ R ++ + D R + K YPD+ + SK RW MS EKQ ++E
Sbjct: 173 KSPNHIKRPMNAFMVWARDERRKILKAYPDMHN--SNISKILGSRWKGMSNSEKQPYYE 229
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -3
Query: 264 SILLFCNDERSKVKAGNPEYTMGDIAKELGRRW 166
+ +++ DER K+ P+ +I+K LG RW
Sbjct: 184 AFMVWARDERRKILKAYPDMHNSNISKILGSRW 216
>U64608-8|AAO91671.1| 316|Caenorhabditis elegans Egg laying
defective protein 13,isoform b protein.
Length = 316
Score = 31.1 bits (67), Expect = 0.87
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = -1
Query: 569 KAIQQAPRSHDSLCILCADVREEHKKKYPDVSVIFAAFSKKCAERWNTMSEKEKQRFHE 393
K+ R ++ + D R + K YPD+ + SK RW MS EKQ ++E
Sbjct: 170 KSPNHIKRPMNAFMVWARDERRKILKAYPDMHN--SNISKILGSRWKGMSNSEKQPYYE 226
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -3
Query: 264 SILLFCNDERSKVKAGNPEYTMGDIAKELGRRW 166
+ +++ DER K+ P+ +I+K LG RW
Sbjct: 181 AFMVWARDERRKILKAYPDMHNSNISKILGSRW 213
>U64608-7|AAX88814.1| 422|Caenorhabditis elegans Egg laying
defective protein 13,isoform c protein.
Length = 422
Score = 31.1 bits (67), Expect = 0.87
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = -1
Query: 569 KAIQQAPRSHDSLCILCADVREEHKKKYPDVSVIFAAFSKKCAERWNTMSEKEKQRFHE 393
K+ R ++ + D R + K YPD+ + SK RW MS EKQ ++E
Sbjct: 276 KSPNHIKRPMNAFMVWARDERRKILKAYPDMHN--SNISKILGSRWKGMSNSEKQPYYE 332
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -3
Query: 264 SILLFCNDERSKVKAGNPEYTMGDIAKELGRRW 166
+ +++ DER K+ P+ +I+K LG RW
Sbjct: 287 AFMVWARDERRKILKAYPDMHNSNISKILGSRW 319
>U64608-6|AAB04597.2| 470|Caenorhabditis elegans Egg laying
defective protein 13,isoform a protein.
Length = 470
Score = 31.1 bits (67), Expect = 0.87
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = -1
Query: 569 KAIQQAPRSHDSLCILCADVREEHKKKYPDVSVIFAAFSKKCAERWNTMSEKEKQRFHE 393
K+ R ++ + D R + K YPD+ + SK RW MS EKQ ++E
Sbjct: 324 KSPNHIKRPMNAFMVWARDERRKILKAYPDMHN--SNISKILGSRWKGMSNSEKQPYYE 380
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -3
Query: 264 SILLFCNDERSKVKAGNPEYTMGDIAKELGRRW 166
+ +++ DER K+ P+ +I+K LG RW
Sbjct: 335 AFMVWARDERRKILKAYPDMHNSNISKILGSRW 367
>AF097319-1|AAD12252.1| 470|Caenorhabditis elegans Sox domain
protein COG-2 protein.
Length = 470
Score = 31.1 bits (67), Expect = 0.87
Identities = 18/59 (30%), Positives = 27/59 (45%)
Frame = -1
Query: 569 KAIQQAPRSHDSLCILCADVREEHKKKYPDVSVIFAAFSKKCAERWNTMSEKEKQRFHE 393
K+ R ++ + D R + K YPD+ + SK RW MS EKQ ++E
Sbjct: 324 KSPNHIKRPMNAFMVWARDERRKILKAYPDMHN--SNISKILGSRWKGMSNSEKQPYYE 380
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/33 (33%), Positives = 19/33 (57%)
Frame = -3
Query: 264 SILLFCNDERSKVKAGNPEYTMGDIAKELGRRW 166
+ +++ DER K+ P+ +I+K LG RW
Sbjct: 335 AFMVWARDERRKILKAYPDMHNSNISKILGSRW 367
>AF099003-3|ABA00149.1| 759|Caenorhabditis elegans Hypothetical
protein Y59C2A.3 protein.
Length = 759
Score = 29.5 bits (63), Expect = 2.7
Identities = 19/56 (33%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
Frame = -1
Query: 440 ERWNTMSEKEKQRFHEMAEQDKHRFDLEMQNYVPPKDMKVRGRK-RQQMKDPNAPK 276
+R++ MSE+EK+ ++ K+ FD PK ++ R+QMKD NA K
Sbjct: 623 DRYHKMSEEEKRLHNQRRRYKKYGFD--------PKSREINLEDVREQMKDANAKK 670
>AF036689-3|AAB88322.2| 557|Caenorhabditis elegans Hypothetical
protein C50A2.2 protein.
Length = 557
Score = 29.5 bits (63), Expect = 2.7
Identities = 17/53 (32%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
Frame = -1
Query: 422 SEKEKQRFHEMAEQDKHRFDLEMQNYVPPKDMKVRGRK---RQQMKDPNAPKR 273
S K QR M +++K L++ K K+ +K R Q DP+APK+
Sbjct: 126 SSKPAQRTEPMTQREKFDAILQISEISLEKQYKLTNKKVPRRSQFTDPDAPKK 178
>Z81089-3|CAB03137.1| 275|Caenorhabditis elegans Hypothetical
protein F53H4.4 protein.
Length = 275
Score = 29.1 bits (62), Expect = 3.5
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +1
Query: 385 SAISWNRCFSFSDIVFHLSAHFFENAANITLTSGYFFLCSSRTSAQRMHK 534
S ISWNR S + ++ FFE+ +T G LC + Q M K
Sbjct: 200 SRISWNR----SGLYYNAIIQFFESLRGTVITQGEQPLCEKSVTYQEMLK 245
>Z72517-8|CAA96697.2| 1883|Caenorhabditis elegans Hypothetical protein
C26C6.1a protein.
Length = 1883
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Frame = -3
Query: 258 LLFCNDERSKVKAGNPEYTMGDIAKELGRRWAAADPETKAKXDALSE---KDKARYD 97
+LF + R ++ NP+ G+++K +G W E K + +E +KA+ D
Sbjct: 1457 ILFSAEVRKRIMHENPDAGFGEVSKIVGIEWKKLSEEQKKHYEMRAEVVAVEKAKQD 1513
>Z72503-12|CAA96600.2| 1883|Caenorhabditis elegans Hypothetical
protein C26C6.1a protein.
Length = 1883
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Frame = -3
Query: 258 LLFCNDERSKVKAGNPEYTMGDIAKELGRRWAAADPETKAKXDALSE---KDKARYD 97
+LF + R ++ NP+ G+++K +G W E K + +E +KA+ D
Sbjct: 1457 ILFSAEVRKRIMHENPDAGFGEVSKIVGIEWKKLSEEQKKHYEMRAEVVAVEKAKQD 1513
>Z72503-5|CAI79155.1| 513|Caenorhabditis elegans Hypothetical
protein C26C6.1b protein.
Length = 513
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Frame = -3
Query: 258 LLFCNDERSKVKAGNPEYTMGDIAKELGRRWAAADPETKAKXDALSE---KDKARYD 97
+LF + R ++ NP+ G+++K +G W E K + +E +KA+ D
Sbjct: 87 ILFSAEVRKRIMHENPDAGFGEVSKIVGIEWKKLSEEQKKHYEMRAEVVAVEKAKQD 143
>U80447-4|AAB37808.1| 560|Caenorhabditis elegans Temporarily
assigned gene nameprotein 326 protein.
Length = 560
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = -1
Query: 440 ERWNTMSEKEKQRFHE--MAEQDKHRFDLEMQNYVPPKDMKVRGRKRQQMKDPNAPKRSL 267
E +N+M+EKEK++ H+ M+ D + K+ K + + + + KD K+S
Sbjct: 242 EFFNSMTEKEKKKLHKKLMSGADLEDVMKKKSKKEKKKEKKEKRKNKDKKKDKKKNKKSK 301
Query: 266 S 264
S
Sbjct: 302 S 302
>DQ645890-1|ABG34266.1| 560|Caenorhabditis elegans CIR-1 protein.
Length = 560
Score = 28.7 bits (61), Expect = 4.7
Identities = 17/61 (27%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Frame = -1
Query: 440 ERWNTMSEKEKQRFHE--MAEQDKHRFDLEMQNYVPPKDMKVRGRKRQQMKDPNAPKRSL 267
E +N+M+EKEK++ H+ M+ D + K+ K + + + + KD K+S
Sbjct: 242 EFFNSMTEKEKKKLHKKLMSGADLEDVMKKKSKKEKKKEKKEKRKNKDKKKDKKKNKKSK 301
Query: 266 S 264
S
Sbjct: 302 S 302
>AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal element
on autosome protein2 protein.
Length = 1758
Score = 28.7 bits (61), Expect = 4.7
Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
Frame = -3
Query: 687 TTRYRQHYR-GNLPL-YRSCSNRHSSKLYSKQ 598
+T ++ H GNL L Y S S+RH S LYS Q
Sbjct: 373 STSFQHHNSTGNLTLSYSSSSSRHQSSLYSPQ 404
>AC024211-1|AAF36065.1| 252|Caenorhabditis elegans Hypothetical
protein Y76B12C.4 protein.
Length = 252
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 3/54 (5%)
Frame = -1
Query: 452 KKCAERWNTMSEKEKQRFHEMAEQDKHRFDLEMQ---NYVPPKDMKVRGRKRQQ 300
K+ AE+ EKEK++ HE E DK + E + PPK++ K ++
Sbjct: 67 KEAAEK-EKEKEKEKEKTHEKNEADKEEKEAEKEEEKEEKPPKEVTEEKEKEKE 119
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,526,775
Number of Sequences: 27780
Number of extensions: 346255
Number of successful extensions: 1254
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 1179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1250
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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