Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40153
         (635 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q17DS0 Cluster: Putative uncharacterized protein; n=1; ...    38   0.20 
UniRef50_Q08NU1 Cluster: Isochorismatase hydrolase; n=1; Stigmat...    36   0.82 
UniRef50_UPI00006CC0B5 Cluster: hypothetical protein TTHERM_0021...    36   1.1  
UniRef50_A4PIG7 Cluster: Transcription factor protein; n=2; Cion...    34   2.5  
UniRef50_Q758H6 Cluster: 2',3'-cyclic-nucleotide 3'-phosphodiest...    34   3.3  
UniRef50_Q00W81 Cluster: RNA polymerase II transcription elongat...    33   7.6  
UniRef50_Q7RCG2 Cluster: Dentin sialoprotein-phosphophoryn; n=1;...    33   7.6  

>UniRef50_Q17DS0 Cluster: Putative uncharacterized protein; n=1; Aedes
            aegypti|Rep: Putative uncharacterized protein - Aedes
            aegypti (Yellowfever mosquito)
          Length = 2351

 Score = 37.9 bits (84), Expect = 0.20
 Identities = 27/82 (32%), Positives = 38/82 (46%), Gaps = 2/82 (2%)
 Frame = +2

Query: 335  NIGE-DFFAWRPREDEKDDTASTKDAKAQQIQLIIKPNPGI-IVDDQRPAADVRSDVTKT 508
            NI + DF  W  + DEKD+ A  K AKAQQ Q   +P   +  + +    A   SD+   
Sbjct: 914  NINQFDFRTWLDKIDEKDNLAGRKKAKAQQQQQQQQPYHNVEAIHENLELALSDSDLCFE 973

Query: 509  QTRGLTNTKTCQVLTGVALDMC 574
               G+  +K   V    A+D C
Sbjct: 974  SKYGIDGSKQPNVNLAFAMDPC 995


>UniRef50_Q08NU1 Cluster: Isochorismatase hydrolase; n=1;
           Stigmatella aurantiaca DW4/3-1|Rep: Isochorismatase
           hydrolase - Stigmatella aurantiaca DW4/3-1
          Length = 197

 Score = 35.9 bits (79), Expect = 0.82
 Identities = 22/81 (27%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
 Frame = +2

Query: 338 IGEDFFAWRPREDEKDDTASTKDAKAQQIQLIIKPNPG--IIVDDQRPAADVRSDVTKTQ 511
           + ++F  WR   DE  +  +  DA+ +++ L +KP+P    IV  +  A    S V   +
Sbjct: 55  VNDNFGQWRSNFDELFEYCTRSDARGREVALALKPHPDDYFIVKPKHSAFFSTSLVPLLE 114

Query: 512 TRGLTNTKTCQVLTGVALDMC 574
             G ++     +LTG+A ++C
Sbjct: 115 YLGTSHL----ILTGIATNLC 131


>UniRef50_UPI00006CC0B5 Cluster: hypothetical protein
           TTHERM_00218240; n=1; Tetrahymena thermophila SB210|Rep:
           hypothetical protein TTHERM_00218240 - Tetrahymena
           thermophila SB210
          Length = 1403

 Score = 35.5 bits (78), Expect = 1.1
 Identities = 29/102 (28%), Positives = 45/102 (44%), Gaps = 2/102 (1%)
 Frame = +3

Query: 3   NTERNAHASVELTD--APPSSAEDTPMLMGAERGADRKVNELLRDDSRENWDVGXSCFRR 176
           N + +A  S++L    +P +SA       GA    D+K++ L+R  SR          + 
Sbjct: 292 NNKSSARPSIKLNQVQSPQNSASKKQDSTGALDNLDKKIDYLMRKQSR----------KV 341

Query: 177 NNSQTMLQPLQRLTTDEGGADSGIESRDKMTSRPSGTRTGKR 302
           + + T L  +Q L  D G  D+   S +   SRPSG     R
Sbjct: 342 SQAFTELGSMQNLGQDSGRGDNNKSSNNTSFSRPSGPNQAMR 383


>UniRef50_A4PIG7 Cluster: Transcription factor protein; n=2; Ciona
           intestinalis|Rep: Transcription factor protein - Ciona
           intestinalis (Transparent sea squirt)
          Length = 690

 Score = 34.3 bits (75), Expect = 2.5
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = +2

Query: 362 RPREDEKDDTASTKDAKAQQIQLIIKPNPGIIVDDQRPAADVRSDVTKTQTR 517
           +P  DE+DDTAS K+ K   + ++I  + G +V             TK Q+R
Sbjct: 469 QPLNDEQDDTASPKEIKPVNLPVVIPQSVGTLVPASVSPPSSTEQATKKQSR 520


>UniRef50_Q758H6 Cluster: 2',3'-cyclic-nucleotide
           3'-phosphodiesterase; n=1; Eremothecium gossypii|Rep:
           2',3'-cyclic-nucleotide 3'-phosphodiesterase - Ashbya
           gossypii (Yeast) (Eremothecium gossypii)
          Length = 216

 Score = 33.9 bits (74), Expect = 3.3
 Identities = 21/77 (27%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
 Frame = -2

Query: 628 VIILESCLPDADLYSHRLT---HV*CDSCQNLTGLCVCQSSCLRFRDVTPDVSGGPLVVY 458
           ++ L++  PDA L+   +T    + CDS  +   +     + LR      D  G P+V +
Sbjct: 23  ILSLQTLFPDAVLFEPHVTITSQLRCDSADDAAAVLAAACAALRACRPQLDARGSPVVRF 82

Query: 457 DYSRV--RLYDQLYLLC 413
           D   V  R +D+++L C
Sbjct: 83  DAVAVGRRYFDKVHLAC 99


>UniRef50_Q00W81 Cluster: RNA polymerase II transcription elongation
           factor DSIF/SUPT5H/SPT5; n=3; Ostreococcus|Rep: RNA
           polymerase II transcription elongation factor
           DSIF/SUPT5H/SPT5 - Ostreococcus tauri
          Length = 501

 Score = 32.7 bits (71), Expect = 7.6
 Identities = 16/54 (29%), Positives = 25/54 (46%)
 Frame = +2

Query: 329 TFNIGEDFFAWRPREDEKDDTASTKDAKAQQIQLIIKPNPGIIVDDQRPAADVR 490
           TFN G DF+ W P E    D  +   A   Q Q   + +  + V ++ P A ++
Sbjct: 82  TFNPGSDFWTWTPPEAAGSDKVAAAAAPKLQRQTETRVSAAVAVAERAPEASLQ 135


>UniRef50_Q7RCG2 Cluster: Dentin sialoprotein-phosphophoryn; n=1;
           Plasmodium yoelii yoelii|Rep: Dentin
           sialoprotein-phosphophoryn - Plasmodium yoelii yoelii
          Length = 821

 Score = 32.7 bits (71), Expect = 7.6
 Identities = 19/63 (30%), Positives = 33/63 (52%)
 Frame = +2

Query: 260 QDDVTPKRDEDRKTVKVVLRSNLTFNIGEDFFAWRPREDEKDDTASTKDAKAQQIQLIIK 439
           +D+++  +D+  KT+ ++ +S    N GED  + +   + KDD     D + QQ Q I  
Sbjct: 246 KDNISNVQDKGVKTITIIPKSK---NQGEDQKSQKSTLENKDDNLKVSDHEPQQKQDIQL 302

Query: 440 PNP 448
           P P
Sbjct: 303 PKP 305


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 527,887,165
Number of Sequences: 1657284
Number of extensions: 9439468
Number of successful extensions: 30294
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 29009
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30280
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 47296372782
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)