Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40153
         (635 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein pr...    22   3.7  
AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein pr...    22   3.7  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    21   6.5  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    21   6.5  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    21   6.5  

>AY490815-1|AAR82970.1|  136|Tribolium castaneum glass protein
          protein.
          Length = 136

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = -3

Query: 48 ARPSALQTHVRS 13
          ARPS L+TH+R+
Sbjct: 4  ARPSTLKTHLRT 15


>AY293621-1|AAP46162.1|  392|Tribolium castaneum glass protein
           protein.
          Length = 392

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = -3

Query: 48  ARPSALQTHVRS 13
           ARPS L+TH+R+
Sbjct: 260 ARPSTLKTHLRT 271


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = +3

Query: 174 RNNSQTMLQPLQRLTTDEGGADSGIESR 257
           R+N  T L P  R+T         +E+R
Sbjct: 166 RSNEDTSLHPSPRITKKANSVSVKVENR 193


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = +3

Query: 174 RNNSQTMLQPLQRLTTDEGGADSGIESR 257
           R+N  T L P  R+T         +E+R
Sbjct: 114 RSNEDTSLHPSPRITKKANSVSVKVENR 141


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = +3

Query: 174 RNNSQTMLQPLQRLTTDEGGADSGIESR 257
           R+N  T L P  R+T         +E+R
Sbjct: 297 RSNEDTSLHPSPRITKKANSVSVKVENR 324


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,184
Number of Sequences: 336
Number of extensions: 2139
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16397237
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)