Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40153
         (635 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0737 - 20572068-20572290,20572785-20572841,20573482-205736...    29   2.3  
07_03_1788 + 29523216-29524867,29525048-29525075                       29   2.3  
01_06_1268 - 35878520-35879353,35879920-35880332,35881109-358815...    29   2.3  
01_01_0588 + 4372877-4372949,4374328-4376262,4376940-4377015,437...    29   4.1  
09_02_0565 + 10710770-10711003,10711368-10711527,10712277-107124...    28   7.1  
10_01_0133 + 1621574-1625779                                           27   9.4  

>08_02_0737 -
           20572068-20572290,20572785-20572841,20573482-20573672,
           20574566-20574700,20575722-20575871
          Length = 251

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 13/22 (59%), Positives = 15/22 (68%)
 Frame = +1

Query: 277 QAGRGQENGQGRAPQQPDLQHR 342
           QAGRG+  G+GRAP Q   Q R
Sbjct: 187 QAGRGRGRGRGRAPFQSQFQGR 208


>07_03_1788 + 29523216-29524867,29525048-29525075
          Length = 559

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 26/92 (28%), Positives = 37/92 (40%), Gaps = 1/92 (1%)
 Frame = +3

Query: 27  SVELTDAPPSSAEDTPMLMGAERGADRK-VNELLRDDSRENWDVGXSCFRRNNSQTMLQP 203
           +V    A P++    P      RG  RK V E + DDS E+WD        ++S+     
Sbjct: 213 NVSAAAATPNNCNSYPP--SRRRGRKRKEVEEEILDDSDEDWDPRKKGATDSDSEV---D 267

Query: 204 LQRLTTDEGGADSGIESRDKMTSRPSGTRTGK 299
             R    +GG  SG   R +   RP     G+
Sbjct: 268 FDRKRVSKGGRGSG-APRGRPRGRPRKNNAGR 298


>01_06_1268 -
           35878520-35879353,35879920-35880332,35881109-35881510,
           35881598-35881619
          Length = 556

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 14/28 (50%), Positives = 18/28 (64%)
 Frame = +3

Query: 45  APPSSAEDTPMLMGAERGADRKVNELLR 128
           A P+ A +TP++  AERG    V ELLR
Sbjct: 87  AEPNEAGETPLVAAAERGHLEVVRELLR 114


>01_01_0588 +
           4372877-4372949,4374328-4376262,4376940-4377015,
           4378900-4378970,4379038-4379144,4379241-4379711,
           4379791-4379976,4380132-4380425,4380820-4381434,
           4382219-4382615,4382768-4382850,4383397-4383567,
           4384046-4384243,4384754-4385314,4385401-4385460,
           4385553-4385869,4385980-4386403,4386539-4387006,
           4387093-4387209,4387306-4387427,4387506-4388247,
           4388453-4388485,4388625-4388879,4388975-4389160,
           4390115-4390453,4391293-4392045
          Length = 3017

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 21/82 (25%), Positives = 34/82 (41%), Gaps = 2/82 (2%)
 Frame = +3

Query: 42  DAPPSSAE--DTPMLMGAERGADRKVNELLRDDSRENWDVGXSCFRRNNSQTMLQPLQRL 215
           DAP +S +  +   L+G  R    +++   ++  R   D   S      S     P+  +
Sbjct: 719 DAPDNSVKLHEMAFLLGVIRSIQSRISAKNQNSIRMGDDKNSSKIGAEVSLNTSLPIVVV 778

Query: 216 TTDEGGADSGIESRDKMTSRPS 281
                G   GIESRD+  S P+
Sbjct: 779 DGVSAGQSGGIESRDRQESTPA 800


>09_02_0565 +
           10710770-10711003,10711368-10711527,10712277-10712477,
           10712564-10712628,10712740-10712767,10712847-10712923,
           10713023-10713109,10713572-10713622,10713857-10713937,
           10714125-10714346,10714424-10714517,10714608-10714748,
           10716383-10716444,10716519-10717106
          Length = 696

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = +1

Query: 538 LSSFDRSRIRHVSGDGNIDQRQED 609
           L ++   RIRH++G GN   RQED
Sbjct: 526 LQTYVPFRIRHINGGGNPRPRQED 549


>10_01_0133 + 1621574-1625779
          Length = 1401

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -2

Query: 577  LTHV*CDSCQNLTGLCVCQSS 515
            L+H+  + C+ +TGLC+ QSS
Sbjct: 1155 LSHLEMEDCKGITGLCMQQSS 1175


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,155,223
Number of Sequences: 37544
Number of extensions: 290622
Number of successful extensions: 933
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 908
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 932
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1561213104
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)