Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40153
         (635 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54878| Best HMM Match : PAP_assoc (HMM E-Value=5.4e-18)             30   1.8  
SB_50208| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.2  
SB_54925| Best HMM Match : MFS_1 (HMM E-Value=4.7e-27)                 29   4.2  
SB_7844| Best HMM Match : RasGEF (HMM E-Value=0.00058)                 27   9.7  

>SB_54878| Best HMM Match : PAP_assoc (HMM E-Value=5.4e-18)
          Length = 1425

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 22/71 (30%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
 Frame = +3

Query: 66   DTPMLMGAERGADRKVNELLRDDSRENWDVGXSCFRRNNSQTMLQPLQRLTTDEGGADS- 242
            D P   G+E+G  +  N   + DS  +  VG        ++T   PL+     +GG DS 
Sbjct: 1100 DRPKASGSEKGKRKTPNRTEKGDSHMSQRVG-------QAETAASPLKAAVRSKGGKDSC 1152

Query: 243  -GIESRDKMTS 272
             G ES+ K  S
Sbjct: 1153 NGNESQSKQGS 1163


>SB_50208| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1705

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 2/59 (3%)
 Frame = +3

Query: 75  MLMGAERGADRKVNELLRDDSRENWDVGXSCFRRNNSQTMLQPLQRLTT--DEGGADSG 245
           +L G E G        L +D+R+N+  G +      + TML PL  LT   D  G  +G
Sbjct: 610 ILHGGEEGELNSGKIWLENDTRDNFKRGRTDIFTVETATMLSPLHHLTLGHDNSGLGAG 668


>SB_54925| Best HMM Match : MFS_1 (HMM E-Value=4.7e-27)
          Length = 1373

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = -2

Query: 490 PDVSGGPLVVYDYSRVRLYDQLYLLCLRIFCGGGVIFLIFP 368
           P  SG P+    Y  +  YD +Y L   + C G  +  + P
Sbjct: 407 PLTSGPPVAGLIYDLLGSYDAVYFLASAMVCAGSCLMFVIP 447


>SB_7844| Best HMM Match : RasGEF (HMM E-Value=0.00058)
          Length = 1299

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 16/67 (23%), Positives = 26/67 (38%)
 Frame = +2

Query: 386 DTASTKDAKAQQIQLIIKPNPGIIVDDQRPAADVRSDVTKTQTRGLTNTKTCQVLTGVAL 565
           DT+ ++    Q +   I     + VDD  P A   S   +     +    +C  +T  A 
Sbjct: 359 DTSDSQHQSQQSLDTAINEILSVSVDDMSPDAATNSSGEQISNAAIATQTSCGHVTSSAS 418

Query: 566 DMCQAMG 586
           D+  A G
Sbjct: 419 DVPAASG 425


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,934,521
Number of Sequences: 59808
Number of extensions: 328526
Number of successful extensions: 1184
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 998
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1181
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1596754500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)