Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40153
(635 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ010708-1|CAA09308.1| 1158|Caenorhabditis elegans calcium ATPas... 31 0.91
AF125446-4|AAD12806.2| 1158|Caenorhabditis elegans Hypothetical ... 31 0.91
U29097-1|AAA68411.1| 1490|Caenorhabditis elegans Hypothetical pr... 29 3.7
Z81534-7|CAN86914.1| 3653|Caenorhabditis elegans Hypothetical pr... 28 4.9
Z81534-6|CAN86913.1| 3719|Caenorhabditis elegans Hypothetical pr... 28 4.9
Z49130-10|CAD59157.2| 3653|Caenorhabditis elegans Hypothetical p... 28 4.9
Z49130-9|CAA88964.2| 3719|Caenorhabditis elegans Hypothetical pr... 28 4.9
AL032667-2|CAN86634.1| 3653|Caenorhabditis elegans Hypothetical ... 28 4.9
AL032667-1|CAN86633.1| 3719|Caenorhabditis elegans Hypothetical ... 28 4.9
AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl... 28 6.4
Z81128-4|CAB03403.1| 898|Caenorhabditis elegans Hypothetical pr... 27 8.5
>AJ010708-1|CAA09308.1| 1158|Caenorhabditis elegans calcium ATPase
protein.
Length = 1158
Score = 30.7 bits (66), Expect = 0.91
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
Frame = -3
Query: 531 VFVNPLVCV-FVTSLLTSA-----AGLWSSTIIPGLGFMISCICC 415
+F NP+ CV ++T+L++ G W ST L I CICC
Sbjct: 965 IFTNPIFCVIWITTLISHILIVQFGGQWFSTAPLDLTQWIICICC 1009
>AF125446-4|AAD12806.2| 1158|Caenorhabditis elegans Hypothetical
protein R05C11.3 protein.
Length = 1158
Score = 30.7 bits (66), Expect = 0.91
Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 6/45 (13%)
Frame = -3
Query: 531 VFVNPLVCV-FVTSLLTSA-----AGLWSSTIIPGLGFMISCICC 415
+F NP+ CV ++T+L++ G W ST L I CICC
Sbjct: 965 IFTNPIFCVIWITTLISHILIVQFGGQWFSTAPLDLTQWIICICC 1009
>U29097-1|AAA68411.1| 1490|Caenorhabditis elegans Hypothetical
protein F18C5.3 protein.
Length = 1490
Score = 28.7 bits (61), Expect = 3.7
Identities = 17/61 (27%), Positives = 28/61 (45%)
Frame = +2
Query: 341 GEDFFAWRPREDEKDDTASTKDAKAQQIQLIIKPNPGIIVDDQRPAADVRSDVTKTQTRG 520
GE F + +EDE+D + + K Q+I +I P +D Q A + + +T
Sbjct: 542 GEKFEISKNQEDEQDVSKNEKHTILQRINRVILPRLSKSLDSQAQAVERNARSAETHATA 601
Query: 521 L 523
L
Sbjct: 602 L 602
>Z81534-7|CAN86914.1| 3653|Caenorhabditis elegans Hypothetical protein
T06D8.1b protein.
Length = 3653
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 156 GXSCFRRNNSQTMLQPLQRLTTDEGGADSGIESRDKMTS 272
G S N+S+T + TTDEG + ES+D+ +S
Sbjct: 3204 GESTVAPNDSETSTTESSQSTTDEGSGVTAAESKDEESS 3242
>Z81534-6|CAN86913.1| 3719|Caenorhabditis elegans Hypothetical protein
T06D8.1a protein.
Length = 3719
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 156 GXSCFRRNNSQTMLQPLQRLTTDEGGADSGIESRDKMTS 272
G S N+S+T + TTDEG + ES+D+ +S
Sbjct: 3204 GESTVAPNDSETSTTESSQSTTDEGSGVTAAESKDEESS 3242
>Z49130-10|CAD59157.2| 3653|Caenorhabditis elegans Hypothetical
protein T06D8.1b protein.
Length = 3653
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 156 GXSCFRRNNSQTMLQPLQRLTTDEGGADSGIESRDKMTS 272
G S N+S+T + TTDEG + ES+D+ +S
Sbjct: 3204 GESTVAPNDSETSTTESSQSTTDEGSGVTAAESKDEESS 3242
>Z49130-9|CAA88964.2| 3719|Caenorhabditis elegans Hypothetical protein
T06D8.1a protein.
Length = 3719
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 156 GXSCFRRNNSQTMLQPLQRLTTDEGGADSGIESRDKMTS 272
G S N+S+T + TTDEG + ES+D+ +S
Sbjct: 3204 GESTVAPNDSETSTTESSQSTTDEGSGVTAAESKDEESS 3242
>AL032667-2|CAN86634.1| 3653|Caenorhabditis elegans Hypothetical
protein T06D8.1b protein.
Length = 3653
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 156 GXSCFRRNNSQTMLQPLQRLTTDEGGADSGIESRDKMTS 272
G S N+S+T + TTDEG + ES+D+ +S
Sbjct: 3204 GESTVAPNDSETSTTESSQSTTDEGSGVTAAESKDEESS 3242
>AL032667-1|CAN86633.1| 3719|Caenorhabditis elegans Hypothetical
protein T06D8.1a protein.
Length = 3719
Score = 28.3 bits (60), Expect = 4.9
Identities = 14/39 (35%), Positives = 21/39 (53%)
Frame = +3
Query: 156 GXSCFRRNNSQTMLQPLQRLTTDEGGADSGIESRDKMTS 272
G S N+S+T + TTDEG + ES+D+ +S
Sbjct: 3204 GESTVAPNDSETSTTESSQSTTDEGSGVTAAESKDEESS 3242
>AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear
anchorage protein1 protein.
Length = 8545
Score = 27.9 bits (59), Expect = 6.4
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = +2
Query: 371 EDEKDDTASTKDAKAQQIQLIIKPNPGIIVDDQRPAADVRSDVTKTQTRGLTNT 532
+ E DD T D ++ QLI+ I +Q P ++SD KT + +TN+
Sbjct: 3821 QTELDDAIKTSDEHDKE-QLILSLKLNISQFEQIPLDQLKSDDLKTAEKEITNS 3873
Score = 27.9 bits (59), Expect = 6.4
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = +2
Query: 371 EDEKDDTASTKDAKAQQIQLIIKPNPGIIVDDQRPAADVRSDVTKTQTRGLTNT 532
+ E DD T D ++ QLI+ I +Q P ++SD KT + +TN+
Sbjct: 4775 QTELDDAIKTSDEHDKE-QLILSLKLNISQFEQIPLDQLKSDDLKTAEKEITNS 4827
Score = 27.9 bits (59), Expect = 6.4
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = +2
Query: 371 EDEKDDTASTKDAKAQQIQLIIKPNPGIIVDDQRPAADVRSDVTKTQTRGLTNT 532
+ E DD T D ++ QLI+ I +Q P ++SD KT + +TN+
Sbjct: 5678 QTELDDAIKTSDEHDKE-QLILSLKLNISQFEQIPLDQLKSDDLKTAEKEITNS 5730
Score = 27.9 bits (59), Expect = 6.4
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = +2
Query: 371 EDEKDDTASTKDAKAQQIQLIIKPNPGIIVDDQRPAADVRSDVTKTQTRGLTNT 532
+ E DD T D ++ QLI+ I +Q P ++SD KT + +TN+
Sbjct: 6581 QTELDDAIKTSDEHDKE-QLILSLKLNISQFEQIPLDQLKSDDLKTAEKEITNS 6633
Score = 27.9 bits (59), Expect = 6.4
Identities = 17/54 (31%), Positives = 27/54 (50%)
Frame = +2
Query: 371 EDEKDDTASTKDAKAQQIQLIIKPNPGIIVDDQRPAADVRSDVTKTQTRGLTNT 532
+ E DD T D ++ QLI+ I +Q P ++SD KT + +TN+
Sbjct: 7484 QTELDDAIKTSDEHDKE-QLILSLKLNISQFEQIPLDQLKSDDLKTAEKEITNS 7536
>Z81128-4|CAB03403.1| 898|Caenorhabditis elegans Hypothetical
protein T23D8.4 protein.
Length = 898
Score = 27.5 bits (58), Expect = 8.5
Identities = 20/61 (32%), Positives = 29/61 (47%)
Frame = +2
Query: 263 DDVTPKRDEDRKTVKVVLRSNLTFNIGEDFFAWRPREDEKDDTASTKDAKAQQIQLIIKP 442
D T +++ + KV + F DF A P EDEK + KD K +++ IIK
Sbjct: 12 DSDTSSSEDEVEDQKV--NKSAKFRDDLDFMAG-PEEDEKRVVRAQKDKKFDELKGIIKQ 68
Query: 443 N 445
N
Sbjct: 69 N 69
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,065,896
Number of Sequences: 27780
Number of extensions: 223524
Number of successful extensions: 656
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1406256614
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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