Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40153
         (635 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g22790.1 68416.m02873 kinase interacting family protein simil...    31   0.85 
At3g45570.1 68416.m04922 zinc finger (C3HC4-type RING finger) fa...    30   1.1  
At5g55920.1 68418.m06975 nucleolar protein, putative similar to ...    30   1.5  
At4g26600.1 68417.m03834 nucleolar protein, putative similar to ...    28   4.5  
At5g66055.2 68418.m08322 ankyrin repeat protein / AKRP (AKR) ide...    27   7.9  
At5g66055.1 68418.m08321 ankyrin repeat protein / AKRP (AKR) ide...    27   7.9  
At5g52230.1 68418.m06483 expressed protein                             27   7.9  
At3g11670.2 68416.m01431 digalactosyldiacylglycerol synthase 1 (...    27   7.9  
At3g11670.1 68416.m01430 digalactosyldiacylglycerol synthase 1 (...    27   7.9  

>At3g22790.1 68416.m02873 kinase interacting family protein similar
           to kinase interacting protein 1 (GI:13936326) [Petunia
           integrifolia]
          Length = 1694

 Score = 30.7 bits (66), Expect = 0.85
 Identities = 23/82 (28%), Positives = 37/82 (45%)
 Frame = +3

Query: 9   ERNAHASVELTDAPPSSAEDTPMLMGAERGADRKVNELLRDDSRENWDVGXSCFRRNNSQ 188
           ER  HA+VEL  A  + AE  P  +  +   D   +      + E    G   F  ++S 
Sbjct: 83  ERYDHATVELCHAHKTMAEAFPNQVPFDMIEDSASSSCSEPRTPEKMPPGIQPFYDSDSA 142

Query: 189 TMLQPLQRLTTDEGGADSGIES 254
           T  + L +LT   G +++ +ES
Sbjct: 143 TSKRGLSQLTEYLGNSETEVES 164


>At3g45570.1 68416.m04922 zinc finger (C3HC4-type RING finger)
           family protein contains a zinc finger, C3HC4 type (RING
           finger), signature, PROSITE:PS00518
          Length = 312

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = +2

Query: 461 DDQRPAADVRSDVTKTQTRGLTNTKTCQVLTGVALDMC 574
           DD +PA +++ +      +GL + +T ++L G A+ +C
Sbjct: 3   DDPKPAGEIKIESYSLYFKGLVSEETTELLAGFAVAIC 40


>At5g55920.1 68418.m06975 nucleolar protein, putative similar to
           SP|P46087 Proliferating-cell nucleolar antigen p120
           (Proliferation-associated nucleolar protein p120) {Homo
           sapiens}, SP|P40991 Nucleolar protein NOP2
           {Saccharomyces cerevisiae}; contains Pfam profile
           PF01189: NOL1/NOP2/sun family
          Length = 682

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 19/63 (30%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +2

Query: 356 AWRPREDEKD-DTASTKDAKAQQIQLIIKPNPGIIVDDQRPAADVRSDVTKTQTRGLTNT 532
           A  PRE+E+  D A+    K   I  ++K N G+I  ++     ++S        G+TNT
Sbjct: 354 ALAPRENERIVDVAAAPGGKTTYIAALMK-NTGLIYANEMKVPRLKSLTANLHRMGVTNT 412

Query: 533 KTC 541
             C
Sbjct: 413 IVC 415


>At4g26600.1 68417.m03834 nucleolar protein, putative similar to
           SP|P46087 Proliferating-cell nucleolar antigen p120
           (Proliferation-associated nucleolar protein p120) {Homo
           sapiens}; contains Pfam profile PF01189: NOL1/NOP2/sun
           family
          Length = 671

 Score = 28.3 bits (60), Expect = 4.5
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
 Frame = +2

Query: 356 AWRPREDEKD-DTASTKDAKAQQIQLIIKPNPGIIVDDQRPAADVRSDVTKTQTRGLTNT 532
           A  PRE E+  D A+    K   +  ++K N GII  ++     ++S        G+TNT
Sbjct: 337 ALAPREKERVVDMAAAPGGKTTYVAALMK-NTGIIYANEMKVPRLKSLSANLHRMGVTNT 395

Query: 533 KTC 541
             C
Sbjct: 396 IVC 398


>At5g66055.2 68418.m08322 ankyrin repeat protein / AKRP (AKR)
           identical to ankyrin repeat protein (AKRP) [Arabidopsis
           thaliana] SWISS-PROT:Q05753
          Length = 359

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +2

Query: 368 REDEKDDTASTKDAKAQQIQLIIKPNPGIIVDDQRPAADVRSDVTKTQTR 517
           R+ + +D  + K+AK  Q++ +I   PG   DD   ++D  + V+    R
Sbjct: 148 RKVDLNDFLTYKEAKLAQLRPVILDKPGNFSDDSGASSDGETAVSSPSER 197


>At5g66055.1 68418.m08321 ankyrin repeat protein / AKRP (AKR)
           identical to ankyrin repeat protein (AKRP) [Arabidopsis
           thaliana] SWISS-PROT:Q05753
          Length = 435

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 14/50 (28%), Positives = 26/50 (52%)
 Frame = +2

Query: 368 REDEKDDTASTKDAKAQQIQLIIKPNPGIIVDDQRPAADVRSDVTKTQTR 517
           R+ + +D  + K+AK  Q++ +I   PG   DD   ++D  + V+    R
Sbjct: 148 RKVDLNDFLTYKEAKLAQLRPVILDKPGNFSDDSGASSDGETAVSSPSER 197


>At5g52230.1 68418.m06483 expressed protein 
          Length = 746

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 19/105 (18%), Positives = 49/105 (46%)
 Frame = +2

Query: 269 VTPKRDEDRKTVKVVLRSNLTFNIGEDFFAWRPREDEKDDTASTKDAKAQQIQLIIKPNP 448
           + PK +   ++ K   R   T NIG   +A + +E + +D  S       +++ + K + 
Sbjct: 64  IDPKSEYIFQSFKDASRYVETGNIGH--YARKLKESDIEDDDSGNGKTVLRLEYVDKRSA 121

Query: 449 GIIVDDQRPAADVRSDVTKTQTRGLTNTKTCQVLTGVALDMCQAM 583
             +++ ++   DVR    +  +    ++K C++ + +++   Q +
Sbjct: 122 DDVLEKEKTIDDVRRSKRRNLSSSDEHSKNCKMTSDLSIVTSQVL 166


>At3g11670.2 68416.m01431 digalactosyldiacylglycerol synthase 1
          (DGD1) / MGDG:MGDG galactosyltransferase / galactolipid
          galactosyltransferase identical to
          digalactosyldiacylglycerol synthase (DGD1) GI:5354158
          [Arabidopsis thaliana]
          Length = 639

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -2

Query: 97 PRSAPMSMGVSSADEGGASVSSTDACAFLS 8
          P S  M+ G SS+     ++SST+A +FLS
Sbjct: 9  PSSTSMTTGTSSSSSLSMTLSSTNALSFLS 38


>At3g11670.1 68416.m01430 digalactosyldiacylglycerol synthase 1
          (DGD1) / MGDG:MGDG galactosyltransferase / galactolipid
          galactosyltransferase identical to
          digalactosyldiacylglycerol synthase (DGD1) GI:5354158
          [Arabidopsis thaliana]
          Length = 808

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = -2

Query: 97 PRSAPMSMGVSSADEGGASVSSTDACAFLS 8
          P S  M+ G SS+     ++SST+A +FLS
Sbjct: 9  PSSTSMTTGTSSSSSLSMTLSSTNALSFLS 38


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,471,853
Number of Sequences: 28952
Number of extensions: 210488
Number of successful extensions: 636
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 626
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1305036432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)