Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40152
(742 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo... 27 2.1
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 27 2.8
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom... 27 2.8
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c... 27 3.7
SPCC1827.08c |pof7|SPCC70.11c|F-box protein Pof7|Schizosaccharom... 26 4.9
SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p... 26 4.9
SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces ... 26 6.5
SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3 |Schizos... 26 6.5
SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|ch... 25 8.6
SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces pom... 25 8.6
>SPBC947.07 |||ribosome biogenesis protein
Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
Length = 233
Score = 27.5 bits (58), Expect = 2.1
Identities = 21/68 (30%), Positives = 36/68 (52%), Gaps = 2/68 (2%)
Frame = -2
Query: 444 SDTCSDDKGSASSVSIAGTNKHASFGSLVTYLDSLITDNTFLYEALTVPSL--GYTKIFG 271
S + D G++S +IA ++ + S +TY ++ D+ F L V G T +FG
Sbjct: 64 SKVAAYDTGNSSD-NIAD-EENDNHKSTITYGTLIVGDDKFSNGKLKVAGKKRGPTDVFG 121
Query: 270 SLPHLESR 247
+L HLE++
Sbjct: 122 ALKHLEAK 129
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 27.1 bits (57), Expect = 2.8
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 5/42 (11%)
Frame = +3
Query: 96 YGNTSFKSDTCK-----SKLNELPSFATLDDLHLKPSRQKRN 206
Y N + SD S L++LP DDL L P +++RN
Sbjct: 158 YNNYDYTSDPSSPNYISSSLDQLPHLDDEDDLQLTPIKEERN 199
>SPBC211.03c |||guanyl-nucleotide exchange
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1462
Score = 27.1 bits (57), Expect = 2.8
Identities = 19/67 (28%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
Frame = +2
Query: 290 PSDGTVSASYRKVLSVIRESRYVTRDPNEACLFVP----AIDTLDADPLSSEHVSDAASR 457
P + V S KV+S + S ++ D F A DT + P E + +
Sbjct: 397 PRERNVETSLHKVVSSLDLSEEISPDRATPTSFTERKRFAFDTRNRPPEVRELIVECLGS 456
Query: 458 LSRLPYW 478
LSR+PY+
Sbjct: 457 LSRIPYF 463
>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 649
Score = 26.6 bits (56), Expect = 3.7
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = +2
Query: 302 TVSASYRKVLSVIRESRYVTRDP-NEACLFVPAIDTLDADPLSSEHVSD 445
TV+ + K +S +R S+ ++ N C + A DT+ A+P+ +HV +
Sbjct: 106 TVTGNQDKPISRLRASKLQIQNFWNYICFELLANDTVPANPIKEKHVEN 154
>SPCC1827.08c |pof7|SPCC70.11c|F-box protein
Pof7|Schizosaccharomyces pombe|chr 3|||Manual
Length = 361
Score = 26.2 bits (55), Expect = 4.9
Identities = 30/123 (24%), Positives = 50/123 (40%), Gaps = 1/123 (0%)
Frame = +2
Query: 287 YPSDGTVSASYRKVLSVIRESRYVTRDPNEACL-FVPAIDTLDADPLSSEHVSDAASRLS 463
Y GT S+ + + +I RY+ PN C+ + + + D S + S +S
Sbjct: 211 YFRPGTSDTSWNQPIHLITYYRYLRLYPNSTCIVYQSSNEPNDVVRNFSVQNTSLFSPMS 270
Query: 464 RLPYWRNGRNHLIFNYMLALGQTMLKILWDLTQVKLYWPEQVLPK*CFVRDLTFHWPLFH 643
P + NG L ++ + ML I++ +Q Y Q L VR + W F+
Sbjct: 271 SSPMFSNGNVALTGSWSMTPSGEML-IVYPASQTYTY--VQKLQ----VRGIRLKWISFY 323
Query: 644 KEH 652
H
Sbjct: 324 SIH 326
>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 595
Score = 26.2 bits (55), Expect = 4.9
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +3
Query: 57 LLFMSCAFLLYCYYGNTSFKSDTC 128
LL+++CAFL Y GN +F+S C
Sbjct: 261 LLWLTCAFLSYMAQGN-AFRSLVC 283
>SPCC737.03c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 615
Score = 25.8 bits (54), Expect = 6.5
Identities = 11/32 (34%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
Frame = +3
Query: 33 MQAKRRYLLLFMSCAFLLYCYYGN-TSFKSDT 125
+Q + YL++ ++C +LL CY + SDT
Sbjct: 282 IQCQALYLIIRLTCLYLLSCYESEILNLSSDT 313
>SPAC1687.22c |puf3|SPAC222.02c|RNA-binding protein Puf3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 732
Score = 25.8 bits (54), Expect = 6.5
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -1
Query: 295 TWVHKNFWITSTFRKSKHVS 236
T H +FWI +T + S+H S
Sbjct: 222 TRAHSDFWIPATSKPSRHAS 241
>SPCC663.14c |||TRP-like ion channel|Schizosaccharomyces pombe|chr
3|||Manual
Length = 687
Score = 25.4 bits (53), Expect = 8.6
Identities = 10/34 (29%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -3
Query: 239 IHTTRLCCRSRIAFLSR-WFKVQIIKCCKRWQFI 141
+ TR+ +S +++R WF+V + C RW +
Sbjct: 354 LRQTRIIAKSSCDYITRYWFRV-LFNACMRWVLV 386
>SPBC16H5.12c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 682
Score = 25.4 bits (53), Expect = 8.6
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +2
Query: 641 HKEHPEKGGVPPAATVQPISGSTE 712
H+ EK G PPAA +PISG E
Sbjct: 434 HEVIEEKSG-PPAAEEEPISGVAE 456
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,355,153
Number of Sequences: 5004
Number of extensions: 72018
Number of successful extensions: 218
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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