Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40152
(742 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0486 - 25582072-25582283,25582366-25582420,25582503-255825... 31 0.73
09_04_0090 + 14512641-14513355,14514158-14514219 31 1.3
03_03_0216 + 15495395-15495566,15495648-15495733,15495824-154958... 31 1.3
01_06_0529 - 30026101-30026277,30026363-30026438,30026509-300265... 29 2.9
07_03_1359 - 25985936-25986083,25986424-25986782,25987026-259871... 28 6.8
04_04_1267 - 32257035-32257337,32257423-32257570,32257656-322578... 28 6.8
12_02_1066 + 25785749-25785868,25785953-25786141,25786250-257864... 28 9.0
08_01_0628 - 5460030-5462960 28 9.0
06_01_0077 + 626126-626137,626222-627421 28 9.0
05_01_0166 + 1145829-1145971,1146211-1146235,1147330-1147425,114... 28 9.0
03_03_0229 - 15612829-15612897,15612982-15613083,15613503-156135... 28 9.0
02_02_0578 + 11745811-11746013,11749902-11750241,11750325-117505... 28 9.0
02_02_0334 - 9051609-9051652,9052065-9052176,9052771-9052827,905... 28 9.0
>04_04_0486 -
25582072-25582283,25582366-25582420,25582503-25582559,
25582674-25582765,25583148-25583280,25583357-25583434,
25583531-25583676,25583702-25583749,25583804-25584011,
25584154-25584220,25584441-25584499
Length = 384
Score = 31.5 bits (68), Expect = 0.73
Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Frame = -2
Query: 372 FGSLVTYLDSLITDNTFLYEALTVPSLGYTKIFGS-LPHL---ESRNMY 238
FGS+ +L + ITD+ +Y +++ PSL Y S LP + E+R MY
Sbjct: 34 FGSIRYHLQASITDSENIYLSISTPSLSYEASPSSGLPEITLQETRKMY 82
>09_04_0090 + 14512641-14513355,14514158-14514219
Length = 258
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/37 (43%), Positives = 22/37 (59%)
Frame = +2
Query: 392 PAIDTLDADPLSSEHVSDAASRLSRLPYWRNGRNHLI 502
PAID L ADP SS H + +R+S R G +H++
Sbjct: 130 PAIDRLAADPSSSSHRAAGDTRMSSAE--RGGDHHMV 164
>03_03_0216 +
15495395-15495566,15495648-15495733,15495824-15495874,
15496005-15496390,15496760-15496898,15497540-15497595,
15497712-15497782,15497876-15498081
Length = 388
Score = 30.7 bits (66), Expect = 1.3
Identities = 22/74 (29%), Positives = 33/74 (44%)
Frame = +2
Query: 254 SKCGSDPKIFVYPSDGTVSASYRKVLSVIRESRYVTRDPNEACLFVPAIDTLDADPLSSE 433
S C S F+ + +YRK I +S+Y T D N C+ V + L A L
Sbjct: 34 SDCESGNAAFLEDFSSRIWITYRKGFDAISDSKY-TSDVNWGCM-VRSSQMLVAQALIFH 91
Query: 434 HVSDAASRLSRLPY 475
H+ + + S+ PY
Sbjct: 92 HLGRSWRKPSQKPY 105
>01_06_0529 -
30026101-30026277,30026363-30026438,30026509-30026570,
30026882-30027031,30027213-30027338,30028096-30028305,
30028870-30028938,30029024-30029080,30029131-30029277,
30029358-30029542,30029623-30029698,30029796-30029918,
30030395-30030410,30031743-30032745,30033521-30033789,
30034297-30034415
Length = 954
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +1
Query: 157 LQHLMICTLNHLDKNAILLLQH 222
LQH++ C NH++K A LL QH
Sbjct: 292 LQHMLGCLKNHVEKYAALLDQH 313
>07_03_1359 -
25985936-25986083,25986424-25986782,25987026-25987153,
25987609-25987727,25988253-25988320
Length = 273
Score = 28.3 bits (60), Expect = 6.8
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +2
Query: 302 TVSASYRKVLSVIRESRYVTRDPNEACLFVPAIDTLDADPLSSEHVSDAASR 457
T +A++ + L VI E Y P E LF + + D++P +SD +R
Sbjct: 171 TTTAAFPQQLPVIIEQHYAAT-PRELQLFPESATSEDSEPSQEHGISDHVTR 221
>04_04_1267 -
32257035-32257337,32257423-32257570,32257656-32257893,
32257994-32258351,32258791-32258969,32259071-32259175,
32259539-32260871
Length = 887
Score = 28.3 bits (60), Expect = 6.8
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
Frame = -2
Query: 351 LDSLITDNT---FLYEALTVPSLGYTKIFGSLPHLESRN 244
L S++TD FL + L +P YTKIFG+L +L S +
Sbjct: 622 LHSMLTDREILLFLKKYLKIPKF-YTKIFGTLRYLVSED 659
>12_02_1066 +
25785749-25785868,25785953-25786141,25786250-25786414,
25786649-25786999,25787924-25788001,25788137-25788277,
25788415-25788459,25788597-25788763,25788833-25788911,
25788985-25789067,25789219-25789348,25789432-25789564,
25789955-25790103,25790339-25790534,25791086-25791288
Length = 742
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/20 (55%), Positives = 13/20 (65%)
Frame = -2
Query: 294 LGYTKIFGSLPHLESRNMYP 235
+GY IFG LP LES+ P
Sbjct: 678 IGYASIFGELPKLESKKDVP 697
>08_01_0628 - 5460030-5462960
Length = 976
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = -2
Query: 468 NLDRREAASDTCSDDKGSASSVSIAGTNKHASFGS 364
N+ R A D C+ + SAS+ IA +FGS
Sbjct: 571 NIRVRHLALDRCTSSRRSASAAKIAALRSFQAFGS 605
>06_01_0077 + 626126-626137,626222-627421
Length = 403
Score = 27.9 bits (59), Expect = 9.0
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -1
Query: 631 PMKCQIPHETLFRKH 587
P++CQIP ETL R H
Sbjct: 120 PLRCQIPQETLQRMH 134
>05_01_0166 +
1145829-1145971,1146211-1146235,1147330-1147425,
1147544-1147645,1147767-1147889,1147996-1148622,
1148710-1148883,1148965-1149181,1149312-1149394,
1149478-1149573,1149676-1149724,1149850-1150088,
1150547-1150618,1150694-1150804,1150930-1151282,
1151377-1151464,1151691-1151789,1151860-1151991,
1152119-1152222,1153179-1153215,1153334-1153367,
1153451-1153467
Length = 1006
Score = 27.9 bits (59), Expect = 9.0
Identities = 19/68 (27%), Positives = 33/68 (48%)
Frame = +2
Query: 395 AIDTLDADPLSSEHVSDAASRLSRLPYWRNGRNHLIFNYMLALGQTMLKILWDLTQVKLY 574
+ID LD L E + S+L + + +L+ NY+ L M K+L D ++K+
Sbjct: 337 SIDKLDWSNLVFEWLMKHLSKLEKSKSFGGCLYYLVVNYLDFLNFGMRKVLQDTPRIKV- 395
Query: 575 WPEQVLPK 598
W ++ K
Sbjct: 396 WKGTMIKK 403
>03_03_0229 -
15612829-15612897,15612982-15613083,15613503-15613553,
15613637-15613706,15613816-15613984,15614217-15614326,
15614443-15614510,15615412-15615480,15616649-15616692,
15616803-15617050,15617620-15617633
Length = 337
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -3
Query: 659 SLDVLYEIMANEMSNPSRNIISEALAL 579
SLDV YE M N+ P+ N++ E L+L
Sbjct: 246 SLDV-YEAMKNDFMRPAINVVDELLSL 271
>02_02_0578 +
11745811-11746013,11749902-11750241,11750325-11750543,
11751043-11751102,11751262-11751417,11751518-11751611,
11751914-11751927
Length = 361
Score = 27.9 bits (59), Expect = 9.0
Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Frame = -3
Query: 734 LWK-ATQMLPLSPKWVGQ*QQVEPLLSLDVLYEIMANEMSNPSRNIISEALALANIASPG 558
LW+ A +P + + LS D+ YE+ AN++ S + + + ++ +A PG
Sbjct: 49 LWRLARAAIPAMATLMSGGSAIAEYLSRDLPYELSANDIYLTSGCVQAIEVMISVLAQPG 108
Query: 557 SN 552
SN
Sbjct: 109 SN 110
>02_02_0334 -
9051609-9051652,9052065-9052176,9052771-9052827,
9053126-9053191,9053391-9053515,9053566-9053625,
9054347-9054418,9055332-9055392
Length = 198
Score = 27.9 bits (59), Expect = 9.0
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +2
Query: 668 VPPAATVQPISGSTEAFG*PSKGK 739
+PP A P++GST +FG P + K
Sbjct: 7 LPPIAAAPPLAGSTLSFGVPYQNK 30
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,022,726
Number of Sequences: 37544
Number of extensions: 443684
Number of successful extensions: 1229
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1188
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1229
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -