Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40152
         (742 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54753| Best HMM Match : No HMM Matches (HMM E-Value=.)             103   2e-22
SB_31787| Best HMM Match : Exostosin (HMM E-Value=8.8e-07)             52   6e-07
SB_44205| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.7  
SB_15579| Best HMM Match : VWA_CoxE (HMM E-Value=2.5)                  29   4.0  
SB_14625| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.056)          28   6.9  
SB_37677| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_1985| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.1  

>SB_54753| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 462

 Score =  103 bits (246), Expect = 2e-22
 Identities = 58/156 (37%), Positives = 86/156 (55%), Gaps = 5/156 (3%)
 Frame = +2

Query: 245 FRLSKCGSDPKIFVYP--SDGTVSASYRKVLSVIRESRYVTRDPNEACLFVPAIDTLDAD 418
           F  +KC SD +I+VYP      +S +Y  ++ VI+ESRY T  P EACLF+ AIDTLD D
Sbjct: 92  FDKTKCLSDFRIYVYPVHPGAKLSTTYTNIIKVIKESRYYTEFPEEACLFITAIDTLDRD 151

Query: 419 PLSSEHVSDAASRLSRLPYWRNGRNHLIFNYMLALGQTMLK-ILWDLTQVKLYWPEQVLP 595
            LS+++V +  +++ +LPYW+NG NH+IFN          + + +D  +  L   +  L 
Sbjct: 152 KLSADYVHNIYNKIRQLPYWKNGENHIIFNLFAGTWPDYSEDVGFDFGKAILV--KASLS 209

Query: 596 K*CFVRDLTFHWPLFHKEHPEK--GGVPPAATVQPI 697
                       PLF K HP K  G +P + +  P+
Sbjct: 210 SDLIRPGFDVSLPLFPKTHPHKDLGNLPHSCSAFPL 245



 Score = 58.0 bits (134), Expect = 7e-09
 Identities = 26/43 (60%), Positives = 34/43 (79%)
 Frame = +1

Query: 508 LYAGTWPDYAEDSLGFDPGEAILARASASEIMFREGFDISLAI 636
           L+AGTWPDY+ED +GFD G+AIL +AS S  + R GFD+SL +
Sbjct: 182 LFAGTWPDYSED-VGFDFGKAILVKASLSSDLIRPGFDVSLPL 223


>SB_31787| Best HMM Match : Exostosin (HMM E-Value=8.8e-07)
          Length = 497

 Score = 51.6 bits (118), Expect = 6e-07
 Identities = 23/70 (32%), Positives = 43/70 (61%)
 Frame = +2

Query: 305 VSASYRKVLSVIRESRYVTRDPNEACLFVPAIDTLDADPLSSEHVSDAASRLSRLPYWRN 484
           +S  + ++L+ I+ES Y T D ++AC+ +P +D L+ + +  +  + A + L    Y  +
Sbjct: 109 ISVHFDEMLTAIKESSYYTDDKDKACIIIPPLDILNQNGMDLKATAQALAALETWKY--S 166

Query: 485 GRNHLIFNYM 514
           G+NHLIFN +
Sbjct: 167 GQNHLIFNML 176


>SB_44205| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 611

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -2

Query: 459 RREAASDTCSDDKGSASSVSIAGTNKHASF 370
           R   +S+TC+D + + S+ S  GTN  AS+
Sbjct: 237 RANTSSNTCADTRSNTSTSSYTGTNTSASY 266


>SB_15579| Best HMM Match : VWA_CoxE (HMM E-Value=2.5)
          Length = 691

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 3/95 (3%)
 Frame = -2

Query: 471 GNLDRREAASDTCSDDKGSASSVSIA-GTNKHASFGSLVTYLDSLITDNTFLYEALTVPS 295
           GN+ R   A   CS    S+ SVS A G+++    G   T L     D TF +E L +  
Sbjct: 131 GNMIRHSTAKRLCSTITTSSQSVSQADGSSQLHVVGE--TRLCFTRADKTFSFEDLVIED 188

Query: 294 LGYTKIFGSLPHLESRN--MYPYDKAVLQKQDCVF 196
           L   ++    P +E  +  M P  + V+   + V+
Sbjct: 189 LD-VEVLAGTPFMEKNDVAMRPAKRQVIVGDNTVY 222


>SB_14625| Best HMM Match : Cytadhesin_P30 (HMM E-Value=0.056)
          Length = 245

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
 Frame = +2

Query: 629 WPLFHKEHPEKGGVPPAATVQ---PISGSTEAFG*PSKG 736
           +P   + +PEKGG PPA   Q   P  G    +G P  G
Sbjct: 175 YPQGQEPYPEKGGYPPAGVGQHSGPYPGQPGMWGPPPMG 213


>SB_37677| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 74

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 14/53 (26%), Positives = 24/53 (45%)
 Frame = +2

Query: 491 NHLIFNYMLALGQTMLKILWDLTQVKLYWPEQVLPK*CFVRDLTFHWPLFHKE 649
           NH  F+Y+ A   T+ K         + W +  L + C +  L F  P+ +K+
Sbjct: 13  NHPFFSYIPAYALTICKAQGQTLDTCIVWTDSPLSRVCRLSSLFFLTPIKYKQ 65


>SB_1985| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 343

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = +2

Query: 320 RKVLSVIRESRYVTRDPNEACLFVPAIDTLDADPLSSEHVS 442
           RK+  VI+   ++ R P+ +CL   + D  D D L+SE V+
Sbjct: 160 RKLAKVIKT--FLRRQPSPSCLVAHSGDRFDFDILASEFVN 198


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,611,432
Number of Sequences: 59808
Number of extensions: 521891
Number of successful extensions: 1483
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1479
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)