Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40152
(742 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z73425-6|CAB61014.1| 382|Caenorhabditis elegans Hypothetical pr... 77 1e-14
U94834-1|AAC47509.1| 378|Caenorhabditis elegans multiple exosto... 77 1e-14
AB241458-1|BAF48989.1| 382|Caenorhabditis elegans heparan sulfa... 77 1e-14
AL132860-9|CAB60524.1| 647|Caenorhabditis elegans Hypothetical ... 32 0.49
Z81576-1|CAB04643.2| 312|Caenorhabditis elegans Hypothetical pr... 30 1.5
Z83234-2|CAB70170.2| 715|Caenorhabditis elegans Hypothetical pr... 29 2.6
AY494975-1|AAR87492.1| 486|Caenorhabditis elegans collagen/olfa... 29 4.6
AF000262-4|AAN60526.2| 486|Caenorhabditis elegans Colmedin (col... 29 4.6
>Z73425-6|CAB61014.1| 382|Caenorhabditis elegans Hypothetical
protein F12F6.3 protein.
Length = 382
Score = 77.0 bits (181), Expect = 1e-14
Identities = 38/96 (39%), Positives = 52/96 (54%), Gaps = 7/96 (7%)
Frame = +2
Query: 245 FRLSKCGSDPKIFVYP-----SDGTVSASYRKVLSVIRESRYVTRDPNEACLFVPAIDTL 409
F SKC + K++++P + S Y K+L ES + T DPNEAC+F+ IDT
Sbjct: 36 FDFSKCSTSKKVYIHPMEKRFEESPQSVIYSKILKHFLESNHYTNDPNEACIFLLGIDTT 95
Query: 410 DADPLSSEHVSDAASRLSRL--PYWRNGRNHLIFNY 511
D D S +V + + L W NGRNHLIFN+
Sbjct: 96 DRDVRSQNYVKNVNDYIESLDPSVWNNGRNHLIFNF 131
Score = 51.2 bits (117), Expect = 7e-07
Identities = 23/42 (54%), Positives = 32/42 (76%)
Frame = +1
Query: 511 YAGTWPDYAEDSLGFDPGEAILARASASEIMFREGFDISLAI 636
Y GT+PDY + +L FD GEA++ARAS+SE F + FD+SL +
Sbjct: 132 YHGTFPDYDDHNLNFDTGEAMIARASSSENNFIKVFDVSLPL 173
>U94834-1|AAC47509.1| 378|Caenorhabditis elegans multiple exostoses
homolog 1 protein.
Length = 378
Score = 77.0 bits (181), Expect = 1e-14
Identities = 38/96 (39%), Positives = 52/96 (54%), Gaps = 7/96 (7%)
Frame = +2
Query: 245 FRLSKCGSDPKIFVYP-----SDGTVSASYRKVLSVIRESRYVTRDPNEACLFVPAIDTL 409
F SKC + K++++P + S Y K+L ES + T DPNEAC+F+ IDT
Sbjct: 32 FDFSKCSTSKKVYIHPMEKRFEESPQSVIYSKILKHFLESNHYTNDPNEACIFLLGIDTT 91
Query: 410 DADPLSSEHVSDAASRLSRL--PYWRNGRNHLIFNY 511
D D S +V + + L W NGRNHLIFN+
Sbjct: 92 DRDVRSQNYVKNVNDYIESLDPSVWNNGRNHLIFNF 127
Score = 51.2 bits (117), Expect = 7e-07
Identities = 23/42 (54%), Positives = 32/42 (76%)
Frame = +1
Query: 511 YAGTWPDYAEDSLGFDPGEAILARASASEIMFREGFDISLAI 636
Y GT+PDY + +L FD GEA++ARAS+SE F + FD+SL +
Sbjct: 128 YHGTFPDYDDHNLNFDTGEAMIARASSSENNFIKVFDVSLPL 169
>AB241458-1|BAF48989.1| 382|Caenorhabditis elegans heparan sulfate
polymerase protein.
Length = 382
Score = 77.0 bits (181), Expect = 1e-14
Identities = 38/96 (39%), Positives = 52/96 (54%), Gaps = 7/96 (7%)
Frame = +2
Query: 245 FRLSKCGSDPKIFVYP-----SDGTVSASYRKVLSVIRESRYVTRDPNEACLFVPAIDTL 409
F SKC + K++++P + S Y K+L ES + T DPNEAC+F+ IDT
Sbjct: 36 FDFSKCSTSKKVYIHPMEKRFEESPQSVIYSKILKHFLESNHYTNDPNEACIFLLGIDTT 95
Query: 410 DADPLSSEHVSDAASRLSRL--PYWRNGRNHLIFNY 511
D D S +V + + L W NGRNHLIFN+
Sbjct: 96 DRDVRSQNYVKNVNDYIESLDPSVWNNGRNHLIFNF 131
Score = 51.2 bits (117), Expect = 7e-07
Identities = 23/42 (54%), Positives = 32/42 (76%)
Frame = +1
Query: 511 YAGTWPDYAEDSLGFDPGEAILARASASEIMFREGFDISLAI 636
Y GT+PDY + +L FD GEA++ARAS+SE F + FD+SL +
Sbjct: 132 YHGTFPDYDDHNLNFDTGEAMIARASSSENNFIKVFDVSLPL 173
>AL132860-9|CAB60524.1| 647|Caenorhabditis elegans Hypothetical
protein Y56A3A.12a protein.
Length = 647
Score = 31.9 bits (69), Expect = 0.49
Identities = 12/23 (52%), Positives = 17/23 (73%)
Frame = -2
Query: 564 TWVKSQRIFSIVWPSASI*LNMR 496
TW SQRIFS++WP+ + L M+
Sbjct: 8 TWSPSQRIFSLIWPATILYLIMK 30
>Z81576-1|CAB04643.2| 312|Caenorhabditis elegans Hypothetical
protein R10E8.1 protein.
Length = 312
Score = 30.3 bits (65), Expect = 1.5
Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 9/55 (16%)
Frame = +2
Query: 383 LFVPAI---DTLDADPLSSEHVSDAASR------LSRLPYWRNGRNHLIFNYMLA 520
+F PAI +TLD+ PL S H+S L++LP+W+ ++ LI ++++
Sbjct: 142 MFAPAIAITETLDSGPLKSIHLSTDKEEEMDCDGLTKLPHWKRIKSLLIEGFIVS 196
>Z83234-2|CAB70170.2| 715|Caenorhabditis elegans Hypothetical
protein K09E4.4 protein.
Length = 715
Score = 29.5 bits (63), Expect = 2.6
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = -2
Query: 657 SGCSL*NNGQ*NVKSLTKHYFGSTCSGQYSFTW 559
SGC + N +S YFG+ C+ YSF W
Sbjct: 118 SGCRKRTSDFINFESKQIRYFGNMCTFSYSFAW 150
>AY494975-1|AAR87492.1| 486|Caenorhabditis elegans
collagen/olfactomedin domain containingprotein 2
protein.
Length = 486
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 443 DAASRLSRLPYWRNGRNHLIFNYML 517
D ++ RLPY +G NH+IFN L
Sbjct: 291 DHVGKVHRLPYIFDGTNHVIFNASL 315
>AF000262-4|AAN60526.2| 486|Caenorhabditis elegans Colmedin
(collagen plus olfactomedin)family protein 2 protein.
Length = 486
Score = 28.7 bits (61), Expect = 4.6
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 443 DAASRLSRLPYWRNGRNHLIFNYML 517
D ++ RLPY +G NH+IFN L
Sbjct: 291 DHVGKVHRLPYIFDGTNHVIFNASL 315
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,474,901
Number of Sequences: 27780
Number of extensions: 405834
Number of successful extensions: 1082
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1076
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1745954468
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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