Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40151
(753 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar... 29 0.71
SPBC8D2.01 |gsk31||serine/threonine protein kinase Gsk31|Schizos... 27 2.2
SPBC16H5.14c ||SPBC21H7.08|short chain dehydrogenase DHRS family... 27 2.9
SPBC106.20 |exo70|SPBC582.02|exocyst complex subunit Exo70 |Schi... 27 3.8
SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces pom... 26 5.0
SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|c... 26 5.0
SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyc... 26 6.6
SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting... 26 6.6
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce... 26 6.6
SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 26 6.6
SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces p... 25 8.8
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 8.8
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa... 25 8.8
SPAC1B3.10c |||SEL1 repeat protein, unknown biological role|Schi... 25 8.8
SPAC22A12.06c |||serine hydrolase|Schizosaccharomyces pombe|chr ... 25 8.8
>SPAC1093.03 |||inositol polyphosphate phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 832
Score = 29.1 bits (62), Expect = 0.71
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +3
Query: 138 LMEQFVRLRDGDRFWYENPSVFKPDQLRQIKETSL 242
L + + L DR Y N + + PD++++IKE L
Sbjct: 760 LADNYTLLSKHDRAMYNNYADYSPDKIKEIKEKEL 794
>SPBC8D2.01 |gsk31||serine/threonine protein kinase
Gsk31|Schizosaccharomyces pombe|chr 2|||Manual
Length = 381
Score = 27.5 bits (58), Expect = 2.2
Identities = 12/43 (27%), Positives = 22/43 (51%)
Frame = -1
Query: 189 FHTKIDRHRVNEQIAPLINI*IRDRLCHLQPDLLKFLLPKHLY 61
+H D + + PL N + + ++P+L K +LP H+Y
Sbjct: 319 YHCSRDEGTIERHLPPLFNFNLAE--LSIRPNLNKAILPPHVY 359
>SPBC16H5.14c ||SPBC21H7.08|short chain dehydrogenase DHRS family
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 286
Score = 27.1 bits (57), Expect = 2.9
Identities = 19/68 (27%), Positives = 34/68 (50%), Gaps = 4/68 (5%)
Frame = -1
Query: 573 TERKSIVRFTGSFEYFDSFLKHSMVCTKSFCKCSNLLKR----PFVILESTSLRARRFSL 406
TE S +++ F S LK ++ K C + LK+ PF ++ + ++ + L
Sbjct: 68 TEPASFLQYNSKF----SALKCNITKDKDVEGCVHSLKKMNRTPFALINAAAIAPKNHLL 123
Query: 405 SVSRSKLQ 382
S+SR +LQ
Sbjct: 124 SISRQELQ 131
>SPBC106.20 |exo70|SPBC582.02|exocyst complex subunit Exo70
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 615
Score = 26.6 bits (56), Expect = 3.8
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +2
Query: 233 NKSSSNLGDNGDNIDTISENVFYLPEVQDGLVSCEDL 343
N+ SSN+ D ++++ +LP +Q GL C++L
Sbjct: 59 NRVSSNIYDTLKEMESLQVIHSHLPVLQKGLQECQNL 95
>SPBC1734.10c |||mRNA processing protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 332
Score = 26.2 bits (55), Expect = 5.0
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +2
Query: 329 SCEDLPSMDLRFWADCESCNFDLDTEREKR 418
S +DLPS + DC SC+ D T KR
Sbjct: 101 SWKDLPSANWMEMLDCWSCHTDYPTVLSKR 130
>SPAPB21F2.02 |||Dopey family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1687
Score = 26.2 bits (55), Expect = 5.0
Identities = 11/41 (26%), Positives = 25/41 (60%), Gaps = 1/41 (2%)
Frame = -2
Query: 596 SSSNGSSL-LKERVSFALQVASSISILFLSTQWYVLNHFVN 477
+ S+G S+ + +R+S L + ++ LFLS W++ + + +
Sbjct: 1047 AESSGVSIDVNKRLSMLLTMQDALQTLFLSYSWHIRSSYAD 1087
>SPBC16H5.09c |||alpha-1,2-mannosyltransferase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 372
Score = 25.8 bits (54), Expect = 6.6
Identities = 12/28 (42%), Positives = 19/28 (67%)
Frame = +2
Query: 659 LLHKVFQIVLRVYDIGQTVAFIKCPALW 742
LL+K + V+ +++IGQTV P+LW
Sbjct: 208 LLNKTYGFVITLFEIGQTV-----PSLW 230
>SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting
complex subunit Apc4|Schizosaccharomyces pombe|chr
1|||Manual
Length = 719
Score = 25.8 bits (54), Expect = 6.6
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +2
Query: 434 VDSNITNGRFNKLEHLQNDLVHTIECLRKESKYSK 538
+D+ + L +LQN++ + CL +E KY K
Sbjct: 393 LDAKLVEDCLATLGYLQNNVFSFLNCLFEEKKYMK 427
>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1210
Score = 25.8 bits (54), Expect = 6.6
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = +2
Query: 443 NITNGRFNKLEHLQNDLVHTIE 508
N+T+G+FN E+ +LV+ IE
Sbjct: 807 NLTSGKFNFAEYETGELVYVIE 828
>SPCC18.17c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 488
Score = 25.8 bits (54), Expect = 6.6
Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Frame = -1
Query: 117 RLCHLQPDLLKFLLPKHLYCELIR---KAPVICPLLLYRLF 4
RLC L PD + L KH + +R K +LLY +F
Sbjct: 277 RLCELHPDAINSLDEKHQLFDAVRERMKTNDATSILLYGVF 317
>SPBC21C3.08c |||ornithine aminotransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 438
Score = 25.4 bits (53), Expect = 8.8
Identities = 11/31 (35%), Positives = 15/31 (48%)
Frame = +2
Query: 527 KYSKLPVKRTILFLSVMNFHSRKSKLVMYST 619
K K+P I+ V NFH R ++ ST
Sbjct: 132 KAKKIPTDEAIILSCVDNFHGRTMGIISMST 162
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 8.8
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = -1
Query: 438 STSLRARRFSLSVSRSKLQDSQSAQKRRSIDGKSSQDTSPSCTS 307
S+S + SLS S S S S+ I SS +SP+ TS
Sbjct: 244 SSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTS 287
>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 502
Score = 25.4 bits (53), Expect = 8.8
Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Frame = +2
Query: 437 DSNITNGRFNKLEHLQNDLVHTIECLRKE-SKYSKLPVKRTILFLSVMN 580
D+NI NG+ KLE L D+ + KE ++ P+ L+L +N
Sbjct: 18 DNNIDNGKRKKLE-LGKDMEDVHDIASKEMEEHETTPIISQNLYLDTIN 65
>SPAC1B3.10c |||SEL1 repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 680
Score = 25.4 bits (53), Expect = 8.8
Identities = 13/53 (24%), Positives = 26/53 (49%)
Frame = -2
Query: 419 AASLSLYQDQNYKIHSQPRNEDPLMANLHKIQAHLVLPVSKIRFR*LYQYYRH 261
AAS Y D +H++ + + ++ L+ V+K+R +Y+Y R+
Sbjct: 248 AASAYTYSDAYQALHTRSQYLREMSNSIEDWDYELMFEVAKLRLHGMYKYPRN 300
>SPAC22A12.06c |||serine hydrolase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 429
Score = 25.4 bits (53), Expect = 8.8
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +2
Query: 230 GNKSSSNLGDNGDNIDTISENVFYLPEVQDGLVSCE 337
G K S + +G DT SENV Y P + L E
Sbjct: 293 GPKVLSLVVTDGQEPDTYSENVHYTPNFKGALAYLE 328
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,080,798
Number of Sequences: 5004
Number of extensions: 66231
Number of successful extensions: 227
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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