Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40151
         (753 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          23   3.1  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      23   3.1  
EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.          23   4.1  
EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.      23   4.1  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   5.4  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   7.1  

>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -2

Query: 389 NYKIHSQPRNEDPLMANLHKIQAHLV 312
           +YK+H +P N+D ++    KI++  V
Sbjct: 431 SYKMHQKPYNKDEIIYPNLKIESFTV 456


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = -2

Query: 389 NYKIHSQPRNEDPLMANLHKIQAHLV 312
           +YK+H +P N+D ++    KI++  V
Sbjct: 431 SYKMHQKPYNKDEIIYPNLKIESFTV 456


>EF625898-1|ABR45905.1|  686|Apis mellifera hexamerin protein.
          Length = 686

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 704 QYHRPLELFGKLY 666
           QYH P E+ G+LY
Sbjct: 249 QYHMPKEIRGQLY 261


>EF589162-1|ABQ84439.1|  686|Apis mellifera hexamerin 70c protein.
          Length = 686

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -2

Query: 704 QYHRPLELFGKLY 666
           QYH P E+ G+LY
Sbjct: 249 QYHMPKEIRGQLY 261


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = +2

Query: 470 LEHLQNDLVHTIECLRKESKYSKLPVKRTILFLSVMNFHSRKSKLV 607
           L++LQ         L  ++   K PV++  LFL++ +   R   L+
Sbjct: 238 LQNLQKKRTRAEGRLSSDNMSKKSPVRKATLFLNMASVFMRIFNLI 283


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 8/11 (72%), Positives = 10/11 (90%)
 Frame = +2

Query: 404 EREKRRARRDV 436
           E +KRRARRD+
Sbjct: 153 EHKKRRARRDI 163


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,455
Number of Sequences: 438
Number of extensions: 4834
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)