Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40151
         (753 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g15730.1 68417.m02394 expressed protein                             29   2.5  
At1g60570.1 68414.m06819 kelch repeat-containing F-box family pr...    29   4.4  
At3g12700.1 68416.m01587 aspartyl protease family protein contai...    28   7.7  
At3g08960.1 68416.m01047 importin beta-2 subunit family protein ...    28   7.7  

>At4g15730.1 68417.m02394 expressed protein
          Length = 1059

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/27 (48%), Positives = 18/27 (66%), Gaps = 6/27 (22%)
 Frame = +2

Query: 347 SMDLRFWADCESCN------FDLDTER 409
           S+DL +WA CESC       +DL+TE+
Sbjct: 413 SVDLDYWAQCESCEKWRLLPYDLNTEK 439


>At1g60570.1 68414.m06819 kelch repeat-containing F-box family
           protein low similarity to SKP1 interacting partner 6
           [Arabidopsis thaliana] GI:10716957; contains Pfam
           profiles PF01344: Kelch motif, PF00646: F-box domain
          Length = 381

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = -3

Query: 277 INIIAIVTKIRARLVSFICRS*SGLNTLGFSYQNRSPSRKRTNC 146
           ++I+A V+++  R +S +C+    L T G  Y+ RS S    NC
Sbjct: 31  LSILARVSRLSYRSLSLVCKRFHSLLTSGEIYRFRSLSGYTENC 74


>At3g12700.1 68416.m01587 aspartyl protease family protein contains
           Pfam PF00026: Eukaryotic aspartyl protease; similar to
           CND41, chloroplast nucleoid DNA binding protein
           (GI:2541876) [Nicotiana tabacum]
          Length = 461

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 10/34 (29%), Positives = 23/34 (67%)
 Frame = +3

Query: 177 FWYENPSVFKPDQLRQIKETSLARILVTMAIILI 278
           FW +NP+  K +Q  ++++T L+ ++ T+ +I +
Sbjct: 7   FWKQNPTGDKKNQEEKMQKTLLSCLITTLLLITV 40


>At3g08960.1 68416.m01047 importin beta-2 subunit family protein low
           similarity to Lph2p [Saccharomyces cerevisiae]
           GI:1163089; contains Pfam profile PF03810: Importin-beta
           N-terminal domain
          Length = 754

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/47 (29%), Positives = 21/47 (44%)
 Frame = +3

Query: 75  VGGILEDQVEGGKVGPLFRCLLMEQFVRLRDGDRFWYENPSVFKPDQ 215
           VGGI+   +   ++  L   L+   FV        WY+NP  F  +Q
Sbjct: 309 VGGIVSSLLPNERIVLLCNVLVRRYFVLTASDLEEWYQNPESFHHEQ 355


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,467,144
Number of Sequences: 28952
Number of extensions: 321773
Number of successful extensions: 971
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 948
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 971
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1672953192
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)