Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40150
         (806 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|...   103   3e-23
SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|S...   102   7e-23
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo...    30   0.44 
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ...    27   4.1  
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb...    27   4.1  
SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces pombe...    25   9.6  
SPAC664.08c |||traub transciption factor family protein |Schizos...    25   9.6  
SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box as...    25   9.6  

>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
           S3a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 252

 Score =  103 bits (247), Expect = 3e-23
 Identities = 46/88 (52%), Positives = 68/88 (77%)
 Frame = +1

Query: 241 FPQIQLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCI 420
           F +++L  E +QG++ L +F+G+ +T+DKLR +V+KWQT IEA+  +KTTDGY+ RVF I
Sbjct: 81  FRKVKLRVEDIQGKSCLTSFNGLSITSDKLRSLVRKWQTTIEADQTIKTTDGYLCRVFVI 140

Query: 421 GFTNKDSLSQRKTCYAQHTQVRAIRKKM 504
           GFT + +   +KT YAQ +Q+RAIR+KM
Sbjct: 141 GFTRRRANQVKKTTYAQSSQIRAIRQKM 168



 Score = 89.4 bits (212), Expect = 5e-19
 Identities = 41/66 (62%), Positives = 51/66 (77%)
 Frame = +2

Query: 53  IVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDA 232
           +VDPF+RK+WYD+KAP+ F  + VG TLVNRT G K A++ LKGR+ EVSLADLQ   D 
Sbjct: 20  VVDPFSRKEWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLADLQ--KDE 77

Query: 233 ERSFRK 250
           E +FRK
Sbjct: 78  EHAFRK 83



 Score = 47.2 bits (107), Expect = 3e-06
 Identities = 24/65 (36%), Positives = 37/65 (56%)
 Frame = +3

Query: 510 IITRDVTNSELREVVNKLIPDSIAKDIEKACHGITLCAMFASEK*KC*KSPRFEISKLMG 689
           +I    ++  +RE+V KLIP+ I ++IE+A   I         K K  K+P+ +  KL+ 
Sbjct: 171 VIQNQTSSCSMRELVQKLIPEVIGREIERATGSIFPLQNVLVRKVKILKAPKHDAQKLLE 230

Query: 690 LHGES 704
           LHGES
Sbjct: 231 LHGES 235


>SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein
           S3a|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 252

 Score =  102 bits (244), Expect = 7e-23
 Identities = 45/88 (51%), Positives = 67/88 (76%)
 Frame = +1

Query: 241 FPQIQLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCI 420
           F +++L  E +QG++ L +F+G D+T+DKLR +V+KWQ+ IEAN  +KTTDGY+ R+F I
Sbjct: 81  FRKVKLRVEDIQGKSCLTSFNGFDMTSDKLRSLVRKWQSTIEANQTIKTTDGYLCRIFVI 140

Query: 421 GFTNKDSLSQRKTCYAQHTQVRAIRKKM 504
           GFT++     +KT YAQ +Q+RAI +KM
Sbjct: 141 GFTSRRVNQVKKTTYAQSSQIRAIHQKM 168



 Score = 92.3 bits (219), Expect = 7e-20
 Identities = 43/66 (65%), Positives = 51/66 (77%)
 Frame = +2

Query: 53  IVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDA 232
           +VDPF+RKDWYD+KAP+ F  + VG TLVNRT G K A++ LKGR+ EVSLADLQ   D 
Sbjct: 20  VVDPFSRKDWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGRILEVSLADLQ--KDE 77

Query: 233 ERSFRK 250
           E SFRK
Sbjct: 78  EHSFRK 83



 Score = 45.6 bits (103), Expect = 8e-06
 Identities = 24/65 (36%), Positives = 35/65 (53%)
 Frame = +3

Query: 510 IITRDVTNSELREVVNKLIPDSIAKDIEKACHGITLCAMFASEK*KC*KSPRFEISKLMG 689
           +I        ++E+V KLIP+ I + IEKA + I         K K  K+P+ +  KL+ 
Sbjct: 171 VIQNQANGCSMKELVQKLIPEVIGRAIEKATNNIYPLQNVFVRKVKILKAPKHDAQKLLE 230

Query: 690 LHGES 704
           LHGES
Sbjct: 231 LHGES 235


>SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1309

 Score = 29.9 bits (64), Expect = 0.44
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = +3

Query: 414  LHWFHQ*GLLEPTQDVLRPAHSGQ--SNQKENV*IITRDVTNSELREVVNKL 563
            LHW+    L+  +Q +  P H+GQ  S  + NV  +   V   E   +++ L
Sbjct: 1162 LHWYSLMSLMGTSQGICIPRHAGQVLSTPRRNVEFVNERVPTPEFSSLLSSL 1213


>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 308

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 17/46 (36%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = +1

Query: 259 IAEYVQGRNVLCNFHGMDLTTDKLRWMV--KKWQTLIEANIDVKTT 390
           +A   Q R V C  H MDL  + LR +V  ++   L+E + D++TT
Sbjct: 109 VANSPQAR-VFCLIHKMDLVQEDLRDLVFEERKAILLETSKDLETT 153


>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 522

 Score = 26.6 bits (56), Expect = 4.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -3

Query: 354 LPFFNHPPELIGCEVHAVEVAEHITS 277
           L    H PEL+ C     +VA+H+TS
Sbjct: 181 LQSMGHSPELVQCITCLPDVADHLTS 206


>SPBC1921.05 |ape2||aminopeptidase Ape2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 882

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 12/46 (26%), Positives = 21/46 (45%)
 Frame = +1

Query: 331 RWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYA 468
           ++    W  L+       T  GYV+R    GFT+  ++ + K  +A
Sbjct: 795 KFATSNWDKLLSRLPVAGTMRGYVVRFVTSGFTHASAIDKIKEFFA 840


>SPAC664.08c |||traub transciption factor family protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 452

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
 Frame = +1

Query: 310 DLTTD-KLRWMVKKWQTLIEANIDVKTTDGYVLR 408
           D T D  +RWM  K Q   + N+D K + G  +R
Sbjct: 351 DSTRDGTVRWMATKKQKQKKENVDTKASKGRKIR 384


>SPAC6F12.11c |sfc1||transcription factor TFIIIC complex A box
           associated subunit Sfc1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 25.4 bits (53), Expect = 9.6
 Identities = 15/32 (46%), Positives = 17/32 (53%)
 Frame = -1

Query: 299 KLQSTLRPCTYSAIN*ICGKTFPRQCQLVDQP 204
           KL STLR   Y+AIN       P Q + VD P
Sbjct: 117 KLDSTLRVLDYNAINKFSIDLTPVQRKHVDMP 148


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,415,834
Number of Sequences: 5004
Number of extensions: 74539
Number of successful extensions: 217
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 392429240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)