Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= wdV40150
(806 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0043 + 5242496-5242554,5242673-5242778,5243586-5243723,524... 127 1e-29
02_02_0482 - 10819562-10819813,10820773-10820952,10822073-108221... 125 4e-29
12_02_0012 - 12309332-12310228,12311087-12311669,12311945-123120... 124 6e-29
10_08_0975 - 21978642-21979520 32 0.47
03_02_0593 + 9693125-9693127,9693632-9693733,9694020-9694135,969... 30 2.5
06_01_0587 - 4211917-4212021,4212250-4212478,4213426-4213759,421... 29 4.4
09_06_0086 - 20763085-20763162,20763233-20763286,20763287-207639... 29 5.8
01_06_0872 + 32609792-32610178,32611262-32611387,32611477-326115... 29 5.8
06_03_0290 - 19193707-19193752,19193822-19194090 28 7.6
03_02_0723 + 10694128-10694793 28 7.6
>03_02_0043 +
5242496-5242554,5242673-5242778,5243586-5243723,
5243794-5243979,5244075-5244275,5244362-5244460
Length = 262
Score = 127 bits (306), Expect = 1e-29
Identities = 58/92 (63%), Positives = 74/92 (80%)
Frame = +1
Query: 235 KVFPQIQLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 414
+ + +I+L AE VQG+NVL NF GM TTDKLR +VKKWQTLIEA++DVKTTDGY+LR+F
Sbjct: 79 QAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDGYMLRLF 138
Query: 415 CIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCE 510
CIGFT + ++TCYAQ +Q+R IR+KM E
Sbjct: 139 CIGFTKRRPNQVKRTCYAQASQIRQIRRKMVE 170
Score = 100 bits (239), Expect = 2e-21
Identities = 47/65 (72%), Positives = 56/65 (86%)
Frame = +2
Query: 56 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 235
VDPF +KDWYD+KAPS+F+ R +G TLV+RTQGTKIASEGLK RVFEVSLADLQ D D
Sbjct: 21 VDPFAKKDWYDIKAPSVFNVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED-- 78
Query: 236 RSFRK 250
+++RK
Sbjct: 79 QAYRK 83
Score = 50.4 bits (115), Expect = 2e-06
Identities = 25/70 (35%), Positives = 43/70 (61%)
Frame = +3
Query: 492 QKENV*IITRDVTNSELREVVNKLIPDSIAKDIEKACHGITLCAMFASEK*KC*KSPRFE 671
+++ V I+ ++ +L+E+V+K IP+ I K+IEKA I K K K+P+F+
Sbjct: 165 RRKMVEIMANQASSCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVFVRKVKILKAPKFD 224
Query: 672 ISKLMGLHGE 701
+ KLM +HG+
Sbjct: 225 LGKLMEVHGD 234
>02_02_0482 -
10819562-10819813,10820773-10820952,10822073-10822150,
10823056-10823256,10823365-10823550,10823646-10823783,
10824396-10824501,10824634-10824692
Length = 399
Score = 125 bits (302), Expect = 4e-29
Identities = 57/92 (61%), Positives = 73/92 (79%)
Frame = +1
Query: 235 KVFPQIQLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 414
+ + +++L AE VQGRNVL NF GM TTDKLR +VKKWQTLIEA++DVKTTD Y+LR+F
Sbjct: 79 QAYRKVRLRAEDVQGRNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLF 138
Query: 415 CIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCE 510
CIGFT + ++TCYAQ +Q+R IR+KM E
Sbjct: 139 CIGFTKRRPNQVKRTCYAQASQIRQIRRKMVE 170
Score = 100 bits (240), Expect = 1e-21
Identities = 47/65 (72%), Positives = 57/65 (87%)
Frame = +2
Query: 56 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 235
VDPF++KDWYD+KAP++FS R +G TLV+RTQGTKIASEGLK RVFEVSLADLQ D D
Sbjct: 21 VDPFSKKDWYDIKAPTVFSVRNIGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED-- 78
Query: 236 RSFRK 250
+++RK
Sbjct: 79 QAYRK 83
Score = 48.8 bits (111), Expect = 5e-06
Identities = 24/70 (34%), Positives = 42/70 (60%)
Frame = +3
Query: 492 QKENV*IITRDVTNSELREVVNKLIPDSIAKDIEKACHGITLCAMFASEK*KC*KSPRFE 671
+++ V I+ + +L+E+V+K IP+ I K+IEK+ I K K K+P+F+
Sbjct: 165 RRKMVEIMANQASTCDLKELVSKFIPEVIGKEIEKSTSSIFPLQNVFIRKVKILKAPKFD 224
Query: 672 ISKLMGLHGE 701
+ KLM +HG+
Sbjct: 225 LGKLMEVHGD 234
>12_02_0012 -
12309332-12310228,12311087-12311669,12311945-12312051,
12313190-12313237,12315139-12315216,12315300-12315500,
12315612-12315797,12315870-12316007,12318311-12318416,
12318529-12318587
Length = 800
Score = 124 bits (300), Expect = 6e-29
Identities = 57/92 (61%), Positives = 73/92 (79%)
Frame = +1
Query: 235 KVFPQIQLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVF 414
+ + +I+L AE VQG+NVL NF GM TTDKLR +VKKWQTLIEA++DVKTTD Y+LR+F
Sbjct: 79 QAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDNYMLRLF 138
Query: 415 CIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCE 510
CIGFT + ++TCYAQ +Q+R IR+KM E
Sbjct: 139 CIGFTKRRPNQVKRTCYAQASQIRQIRRKMVE 170
Score = 100 bits (240), Expect = 1e-21
Identities = 48/65 (73%), Positives = 56/65 (86%)
Frame = +2
Query: 56 VDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDAE 235
VDPF +KDWYD+KAPS+F+ R VG TLV+RTQGTKIASEGLK RVFEVSLADLQ D D
Sbjct: 21 VDPFAKKDWYDIKAPSVFNVRNVGKTLVSRTQGTKIASEGLKHRVFEVSLADLQNDED-- 78
Query: 236 RSFRK 250
+++RK
Sbjct: 79 QAYRK 83
Score = 50.4 bits (115), Expect = 2e-06
Identities = 25/70 (35%), Positives = 43/70 (61%)
Frame = +3
Query: 492 QKENV*IITRDVTNSELREVVNKLIPDSIAKDIEKACHGITLCAMFASEK*KC*KSPRFE 671
+++ V I+ ++ +L+E+V+K IP+ I K+IEKA I K K K+P+F+
Sbjct: 165 RRKMVEIMVNQASSCDLKELVSKFIPEVIGKEIEKATSSIFPLQNVFVRKVKILKAPKFD 224
Query: 672 ISKLMGLHGE 701
+ KLM +HG+
Sbjct: 225 LGKLMEVHGD 234
>10_08_0975 - 21978642-21979520
Length = 292
Score = 32.3 bits (70), Expect = 0.47
Identities = 17/67 (25%), Positives = 31/67 (46%)
Frame = +1
Query: 565 FLTPLPRTSRRPAMALPSARCLHPKSESVEKAPVSRSRN*WDFTAKAVGRQRGKPETSLK 744
+L+ + R RRP A +A L P + +P + + W F + + RQ + T +
Sbjct: 164 WLSSIVRRKRRPEAAATAAESLPPPLDEAPDSPGGSTTSSWWFPSPSPARQHRRRHTGVG 223
Query: 745 RAGGAMS 765
+G +S
Sbjct: 224 ASGDGIS 230
>03_02_0593 +
9693125-9693127,9693632-9693733,9694020-9694135,
9694235-9694357,9694448-9694505,9694733-9694771
Length = 146
Score = 29.9 bits (64), Expect = 2.5
Identities = 24/73 (32%), Positives = 32/73 (43%), Gaps = 2/73 (2%)
Frame = +2
Query: 158 KIASEGLKGRVFEVSLADLQADTDAERSFR--KFN*SPNMCKDVMCSATSTAWTSQPISS 331
K + K R LA AD DA++ R +F S N+ K + A SS
Sbjct: 62 KAEEQKRKSRAERFGLASSSADEDAKKKARLERFGQSTNVDKGEEEKRKARALRFAETSS 121
Query: 332 GGWLKNGRLSSKP 370
G +NG+ SSKP
Sbjct: 122 GPSQENGKDSSKP 134
>06_01_0587 -
4211917-4212021,4212250-4212478,4213426-4213759,
4215116-4215186,4215374-4215493,4216353-4216771,
4216885-4217336,4217434-4217812
Length = 702
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/20 (60%), Positives = 13/20 (65%)
Frame = +1
Query: 568 LTPLPRTSRRPAMALPSARC 627
L P PR RRPA LP+ RC
Sbjct: 509 LVPSPRRRRRPAPRLPALRC 528
>09_06_0086 -
20763085-20763162,20763233-20763286,20763287-20763975,
20764173-20764324,20764404-20764604,20764920-20765064,
20765552-20765588,20765880-20765965,20766093-20766329,
20766501-20766609,20767025-20767135
Length = 632
Score = 28.7 bits (61), Expect = 5.8
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -3
Query: 720 PLPSNRFRREVPSISRSRNGGFFNTF 643
P P++RFR+ + S+ R G FF+ F
Sbjct: 210 PFPNSRFRKWLRSMLREHGGPFFDAF 235
>01_06_0872 +
32609792-32610178,32611262-32611387,32611477-32611550,
32611944-32612013,32612088-32612143,32612236-32612307,
32612384-32612478,32612660-32612726,32612809-32612938,
32613135-32613350,32613461-32613591,32614044-32614218,
32614292-32614382,32614653-32614810,32615059-32615247,
32615551-32615564,32616003-32616228
Length = 758
Score = 28.7 bits (61), Expect = 5.8
Identities = 18/73 (24%), Positives = 31/73 (42%)
Frame = +1
Query: 334 WMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCYAQHTQVRAIRKKMCES 513
W++++W+ + T+G L V G +Q+ ++ + I KK E
Sbjct: 535 WIMEQWENNYYISAIAGATNGSSLVVMSKG----TPYTQQSYKVSESFPFKWINKKWKEG 590
Query: 514 LHATSLTLNSGRW 552
H TS+T RW
Sbjct: 591 FHVTSMTTAGSRW 603
>06_03_0290 - 19193707-19193752,19193822-19194090
Length = 104
Score = 28.3 bits (60), Expect = 7.6
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = +2
Query: 290 SATSTAWTSQPISSGGWLKNGRLSSKPTLM 379
+A S A T P S GW+ G S+ P+L+
Sbjct: 67 AAGSAARTRSPSQSNGWITGGSASAMPSLV 96
>03_02_0723 + 10694128-10694793
Length = 221
Score = 28.3 bits (60), Expect = 7.6
Identities = 28/79 (35%), Positives = 35/79 (44%), Gaps = 5/79 (6%)
Frame = +1
Query: 583 RTSRRPA-MALPSARCLHPKSESVEKAPVSRSRN*WDFTAKAVGRQRGKPET----SLKR 747
R RRP M P P+ E+ RSR W A G Q+GK S++R
Sbjct: 15 RQRRRPTVMGQPGGGHGDPRERGGERNRRERSRRRWIAAAAITGDQKGKTRRDDGGSIQR 74
Query: 748 AGGAMSFPVQGECFN*IIG 804
GG++S VQG F IG
Sbjct: 75 -GGSIS-GVQGIRFRRRIG 91
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,309,573
Number of Sequences: 37544
Number of extensions: 529662
Number of successful extensions: 1521
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1518
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2197677108
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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