Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= wdV40150
         (806 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

X98186-1|CAA66861.1|  269|Anopheles gambiae put. S3a ribosomal p...   142   2e-35
DQ370038-1|ABD18599.1|  122|Anopheles gambiae putative TIL domai...    25   2.1  
AY578812-1|AAT07317.1|  932|Anopheles gambiae wishful thinking p...    24   4.8  
AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha ...    24   6.3  

>X98186-1|CAA66861.1|  269|Anopheles gambiae put. S3a ribosomal
           protein homologue protein.
          Length = 269

 Score =  142 bits (343), Expect = 2e-35
 Identities = 64/88 (72%), Positives = 76/88 (86%)
 Frame = +1

Query: 241 FPQIQLIAEYVQGRNVLCNFHGMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCI 420
           F + +L+AE V GR+VL NFHGM LTTDKLR MV KWQTLIE ++DVKTTDG++LRVFCI
Sbjct: 84  FRKFKLVAESVNGRDVLTNFHGMALTTDKLRSMVNKWQTLIECSVDVKTTDGFMLRVFCI 143

Query: 421 GFTNKDSLSQRKTCYAQHTQVRAIRKKM 504
           GFT KDS+SQRKTCYAQH+Q++ IR KM
Sbjct: 144 GFTIKDSMSQRKTCYAQHSQIKNIRAKM 171



 Score =  123 bits (297), Expect = 6e-30
 Identities = 57/67 (85%), Positives = 61/67 (91%)
 Frame = +2

Query: 53  IVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGTKIASEGLKGRVFEVSLADLQADTDA 232
           +VDPFTRKDWYDVKAP+MF  RQ G TLVNRTQGTKIAS+GLKGRVFEVSLADLQ + DA
Sbjct: 21  VVDPFTRKDWYDVKAPNMFKNRQSGKTLVNRTQGTKIASDGLKGRVFEVSLADLQNEPDA 80

Query: 233 ERSFRKF 253
           ERSFRKF
Sbjct: 81  ERSFRKF 87



 Score = 71.7 bits (168), Expect = 2e-14
 Identities = 36/69 (52%), Positives = 47/69 (68%)
 Frame = +3

Query: 510 IITRDVTNSELREVVNKLIPDSIAKDIEKACHGITLCAMFASEK*KC*KSPRFEISKLMG 689
           II R++T+++L+ VV KL+PDSIAKDIEKAC  +         K K  K PRF++S LM 
Sbjct: 174 IIKREITSTDLKGVVEKLLPDSIAKDIEKACQVVYPLHDVYIRKVKVLKKPRFDLSSLME 233

Query: 690 LHGESGWKA 716
           LHG+ G KA
Sbjct: 234 LHGDGGGKA 242


>DQ370038-1|ABD18599.1|  122|Anopheles gambiae putative TIL domain
           polypeptide protein.
          Length = 122

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = -1

Query: 284 LRPCTYSAIN*ICGKTFPRQ 225
           +RP TY  IN ICG+ + R+
Sbjct: 77  VRPDTYFRINCICGEEYDRE 96


>AY578812-1|AAT07317.1|  932|Anopheles gambiae wishful thinking
           protein.
          Length = 932

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 12/47 (25%), Positives = 22/47 (46%)
 Frame = +1

Query: 601 AMALPSARCLHPKSESVEKAPVSRSRN*WDFTAKAVGRQRGKPETSL 741
           A  +P   C H    ++EKA + +  +     A  +G QR  P+ ++
Sbjct: 554 ARTMPPKGCSHDDGPALEKAQLYQLESDGTAIAAMMGHQRYSPDGTI 600


>AY027891-1|AAK15783.1|  801|Anopheles gambiae collagen IV alpha 1
           chain precursor protein.
          Length = 801

 Score = 23.8 bits (49), Expect = 6.3
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +3

Query: 687 GLHGESGWKAKGKAGDKS*TGRRGYE 764
           G  G SG   KG+AGD+   G RG++
Sbjct: 314 GEPGRSG--EKGQAGDRGQVGERGHK 337


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 878,066
Number of Sequences: 2352
Number of extensions: 19183
Number of successful extensions: 47
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 85239615
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)